CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07042	Canola	cytosol	76.07	89.0
CDX93221	Canola	cytosol	75.21	88.0
Solyc04g072110.2.1	Tomato	cytosol	36.75	71.67
CDY24935	Canola	cytosol	87.18	53.12
CDY24940	Canola	cytosol	87.18	53.12
CDX74817	Canola	cytosol	90.6	50.72
KRH73149	Soybean	endoplasmic reticulum	76.07	48.37
CDY60993	Canola	cytosol, endoplasmic reticulum, plasma membrane	79.49	48.19
Zm00001d020624_P002	Maize	plastid	29.06	47.89
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	75.21	47.83
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	70.09	45.3
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	68.38	43.24
PGSC0003DMT400064539	Potato	golgi	70.09	42.93
Zm00001d013600_P001	Maize	cytosol	27.35	42.67
VIT_13s0019g03400.t01	Wine grape	plasma membrane	69.23	41.54
OQU81657	Sorghum	plasma membrane	67.52	41.15
Os04t0446300-01	Rice	plasma membrane, plastid	67.52	41.15
TraesCS2A01G314500.1	Wheat	golgi	64.96	39.58
TraesCS2B01G332900.1	Wheat	golgi	64.1	39.06
TraesCS2D01G312700.1	Wheat	plasma membrane	64.1	39.06
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	63.25	38.74
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	64.96	35.19
HORVU4Hr1G058460.1	Barley	golgi	14.53	16.67
CDY07043	Canola	cytosol	6.84	7.77
CDX93220	Canola	cytosol	3.42	4.6
CDY20504	Canola	cytosol	3.42	4.08

Protein Annotations

KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MapMan:18.10.1.1.3	GO:A0A078G7B0
UniProt:A0A078G7B0	EnsemblPlants:CDY20503	ProteinID:CDY20503	ProteinID:CDY20503.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005787
GO:GO:0006465	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00012607001	PFAM:PF06703	PANTHER:PTHR13085
InterPro:SigPept_cplx_su2	UniParc:UPI0004EDBF83	:	:	:	:

Description

BnaC04g05410DBnaC04g05410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7B0]

Coordinates

chrLK032108:-:558392..559576

Molecular Weight (calculated)

13113.7 Da

IEP (calculated)

6.858

GRAVY (calculated)

-0.220

Length

117 amino acids

Sequence
(BLAST)

001: MFGFFDYGKY VVLNGVLQLI LYTKEKNAIL FTNPPEGSFT STGLVMSSKL PRFSDEYTLT IDSADPKSIS AGKSVQLTKS VTQWFTKDGV LVEGLFWKDV
101: EALIKDYAEE GEPKKKK

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.