Factsheet for Solyc04g072110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 3
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1
Solyc12g006540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39960.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT2G39960.1	Solyc12g006540.1.1	AT3G15710.1	21798944
AT2G39960.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT2G39960.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT2G39960.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT2G39960.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07042	Canola	cytosol	71.67	43.0
CDX93221	Canola	cytosol	70.0	42.0
CDY20503	Canola	endoplasmic reticulum	71.67	36.75
PGSC0003DMT400064539	Potato	golgi	98.33	30.89
Zm00001d020624_P002	Maize	plastid	31.67	26.76
KRH73149	Soybean	endoplasmic reticulum	76.67	25.0
Zm00001d013600_P001	Maize	cytosol	30.0	24.0
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	73.33	23.91
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	71.67	23.24
CDY24935	Canola	cytosol	73.33	22.92
CDY24940	Canola	cytosol	73.33	22.92
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	68.33	22.65
CDY60993	Canola	cytosol, endoplasmic reticulum, plasma membrane	71.67	22.28
AT4G04200.1	Thale cress	cytosol, golgi, plasma membrane	70.0	22.11
AT2G39960.1	Thale cress	cytosol, golgi, plasma membrane	70.0	21.88
OQU81657	Sorghum	plasma membrane	70.0	21.88
Bra004998.1-P	Field mustard	cytosol	71.67	21.72
VIT_13s0019g03400.t01	Wine grape	plasma membrane	70.0	21.54
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	66.67	20.94
TraesCS2D01G312700.1	Wheat	plasma membrane	66.67	20.83
TraesCS2B01G332900.1	Wheat	golgi	66.67	20.83
Os04t0446300-01	Rice	plasma membrane, plastid	66.67	20.83
TraesCS2A01G314500.1	Wheat	golgi	66.67	20.83
CDX74817	Canola	cytosol	71.67	20.57
Bra017043.1-P	Field mustard	cytosol	71.67	19.82
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	66.67	18.52
CDY07043	Canola	cytosol	6.67	3.88
CDX93220	Canola	cytosol	3.33	2.3
CDY20504	Canola	cytosol	3.33	2.04
HORVU4Hr1G058460.1	Barley	golgi	0.0	0.0

Protein Annotations

MapMan:18.10.1.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0045047	UniProt:K4BTJ8	PFAM:PF06703	PANTHER:PTHR13085	InterPro:SigPept_cplx_su2
EnsemblPlantsGene:Solyc04g072110.2	EnsemblPlants:Solyc04g072110.2.1	UniParc:UPI0002766C16	:	:	:

Description

No Description!

Coordinates

chr4:-:59152844..59153351

Molecular Weight (calculated)

6849.1 Da

IEP (calculated)

7.530

GRAVY (calculated)

-0.468

Length

60 amino acids

Sequence
(BLAST)

1: MYTLTVESAD PKSISARPKV EFTKSVTKWF AEDGVLVEGL FWKDVEALVN DYAKEHKKSK

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.