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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • cytosol 2
  • golgi 2
  • endoplasmic reticulum 3
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:golgi
Plant-mPloc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH56207 Soybean endoplasmic reticulum 93.89 93.89
AT1G52600.1 Thale cress endoplasmic reticulum 93.89 93.89
Bra018976.1-P Field mustard cytosol, endoplasmic reticulum, golgi 93.33 93.33
CDY65907 Canola cytosol, endoplasmic reticulum, golgi 93.33 93.33
Bra030372.1-P Field mustard endoplasmic reticulum 93.33 93.33
CDY40147 Canola cytosol, endoplasmic reticulum, golgi 93.33 93.33
CDX87924 Canola endoplasmic reticulum 92.78 92.78
CDY60554 Canola endoplasmic reticulum 92.78 92.78
VIT_09s0002g06550.t01 Wine grape endoplasmic reticulum 92.22 92.22
CDY70157 Canola endoplasmic reticulum, golgi, vacuole 77.78 91.5
Bra040958.1-P Field mustard endoplasmic reticulum, golgi, vacuole 76.67 90.2
GSMUA_Achr2P06860_001 Banana endoplasmic reticulum 88.33 88.33
KRH02723 Soybean endoplasmic reticulum 93.33 87.96
CDY47542 Canola endoplasmic reticulum 87.22 87.22
CDY21864 Canola endoplasmic reticulum 86.67 86.67
CDY20147 Canola endoplasmic reticulum 86.67 86.67
Bra021131.1-P Field mustard endoplasmic reticulum 86.67 86.67
Os06t0273800-02 Rice endoplasmic reticulum, golgi, plasma membrane 86.11 86.11
EES19438 Sorghum endoplasmic reticulum 85.56 85.56
Zm00001d037926_P001 Maize endoplasmic reticulum 85.0 85.0
Zm00001d009866_P004 Maize endoplasmic reticulum 85.0 85.0
AT3G15710.1 Thale cress endoplasmic reticulum 85.0 85.0
EES16720 Sorghum plasma membrane 84.44 84.44
Os05t0297900-01 Rice plasma membrane 84.44 84.44
Bra027214.1-P Field mustard cytosol, endoplasmic reticulum, golgi 83.89 83.89
CDY30100 Canola cytosol, endoplasmic reticulum, golgi 83.33 83.33
CDX97698 Canola cytosol, endoplasmic reticulum, golgi 83.33 83.33
GSMUA_Achr8P30160_001 Banana plasma membrane 79.44 79.44
PGSC0003DMT400048805 Potato plastid 87.22 76.96
HORVU1Hr1G057530.2 Barley endoplasmic reticulum, plasma membrane, plastid 85.56 71.96
EES07797 Sorghum endoplasmic reticulum 66.67 65.93
HORVU5Hr1G109380.2 Barley cytosol, golgi, plasma membrane, plastid 83.89 61.63
TraesCS6D01G314000.1 Wheat cytosol 40.56 51.77
TraesCS6A01G333000.2 Wheat extracellular, golgi 40.0 49.66
TraesCS6D01G312400.1 Wheat endoplasmic reticulum, golgi 41.67 49.34
TraesCS6D01G311800.1 Wheat endoplasmic reticulum, golgi, vacuole 44.44 47.34
TraesCS6B01G363400.1 Wheat endoplasmic reticulum, golgi, vacuole 43.89 46.75
Zm00001d032189_P001 Maize extracellular, mitochondrion 20.56 46.25
TraesCS6A01G334600.1 Wheat golgi 43.33 46.15
TraesCS6D01G313700.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 43.33 46.15
TraesCS6D01G312200.1 Wheat golgi 42.78 45.56
TraesCS3D01G089300.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 41.11 43.79
Zm00001d051850_P001 Maize endoplasmic reticulum 65.56 36.99
Protein Annotations
MapMan:18.10.1.1.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005787GO:GO:0006465GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0008233GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538UniProt:K4DBJ1InterPro:LexA/Signal_pep-like_sfPFAM:PF00717PRINTS:PR00728PANTHER:PTHR10806
PANTHER:PTHR10806:SF16InterPro:Peptidase_S24_S26A/B/CInterPro:Peptidase_S26BMEROPS:S26.010SUPFAM:SSF51306EnsemblPlantsGene:Solyc12g006540.1
EnsemblPlants:Solyc12g006540.1.1TIGRFAMs:TIGR02228UniParc:UPI000276A946:::
Description
Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:K4DBJ1]
Coordinates
chr12:+:1050794..1055944
Molecular Weight (calculated)
20053.0 Da
IEP (calculated)
9.045
GRAVY (calculated)
0.295
Length
180 amino acids
Sequence
(BLAST)
001: MGWIGEQIDS IKSIQYRQLV TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR EIPIVHRVIK
101: VHERKDTGEV NVLTKGDNNF GDDRLLYAQG QLWLQRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
Best Arabidopsis Sequence Match ( AT1G52600.1 )
(BLAST)
001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
Arabidopsis Description
Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.