Factsheet for PGSC0003DMT400048805

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
plasma membrane 2
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70157	Canola	endoplasmic reticulum, golgi, vacuole	68.63	91.5
KRH09745	Soybean	extracellular, golgi, vacuole	68.14	90.85
Bra040958.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	67.65	90.2
Solyc12g006540.1.1	Tomato	nucleus	76.96	87.22
VIT_09s0002g06550.t01	Wine grape	endoplasmic reticulum	73.53	83.33
AT1G52600.1	Thale cress	endoplasmic reticulum	73.53	83.33
Bra018976.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	73.04	82.78
CDY65907	Canola	cytosol, endoplasmic reticulum, golgi	73.04	82.78
CDY40147	Canola	cytosol, endoplasmic reticulum, golgi	73.04	82.78
Bra030372.1-P	Field mustard	endoplasmic reticulum	72.55	82.22
CDX87924	Canola	endoplasmic reticulum	72.55	82.22
CDY60554	Canola	endoplasmic reticulum	72.06	81.67
GSMUA_Achr2P06860_001	Banana	endoplasmic reticulum	72.06	81.67
Zm00001d037926_P001	Maize	endoplasmic reticulum	70.1	79.44
EES19438	Sorghum	endoplasmic reticulum	70.1	79.44
Os06t0273800-02	Rice	endoplasmic reticulum, golgi, plasma membrane	70.1	79.44
EES16720	Sorghum	plasma membrane	69.12	78.33
Zm00001d009866_P004	Maize	endoplasmic reticulum	69.12	78.33
CDY47542	Canola	endoplasmic reticulum	68.63	77.78
CDY21864	Canola	endoplasmic reticulum	68.63	77.78
CDY20147	Canola	endoplasmic reticulum	68.63	77.78
Bra021131.1-P	Field mustard	endoplasmic reticulum	68.63	77.78
Os05t0297900-01	Rice	plasma membrane	68.14	77.22
AT3G15710.1	Thale cress	endoplasmic reticulum	68.14	77.22
Bra027214.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	66.67	75.56
CDY30100	Canola	cytosol, endoplasmic reticulum, golgi	66.18	75.0
CDX97698	Canola	cytosol, endoplasmic reticulum, golgi	66.18	75.0
GSMUA_Achr8P30160_001	Banana	plasma membrane	63.73	72.22
VIT_11s0016g05130.t01	Wine grape	cytosol, golgi, plasma membrane	62.75	71.11
HORVU1Hr1G057530.2	Barley	endoplasmic reticulum, plasma membrane, plastid	69.61	66.36
EES07797	Sorghum	endoplasmic reticulum	56.37	63.19
HORVU5Hr1G109380.2	Barley	cytosol, golgi, plasma membrane, plastid	68.14	56.73
TraesCS6D01G314000.1	Wheat	cytosol	35.78	51.77
TraesCS6A01G333000.2	Wheat	extracellular, golgi	35.29	49.66
TraesCS6D01G312400.1	Wheat	endoplasmic reticulum, golgi	36.76	49.34
TraesCS6D01G311800.1	Wheat	endoplasmic reticulum, golgi, vacuole	38.73	46.75
Zm00001d032189_P001	Maize	extracellular, mitochondrion	18.14	46.25
TraesCS6A01G334600.1	Wheat	golgi	38.24	46.15
TraesCS6B01G363400.1	Wheat	endoplasmic reticulum, golgi, vacuole	38.24	46.15
TraesCS6D01G313700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	38.24	46.15
TraesCS6D01G312200.1	Wheat	golgi	37.75	45.56
TraesCS3D01G089300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	36.27	43.79
Zm00001d051850_P001	Maize	endoplasmic reticulum	54.9	35.11

Protein Annotations

MapMan:18.10.1.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006465	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	InterPro:LexA/Signal_pep-like_sf	UniProt:M1BMW5	PFAM:PF00717	EnsemblPlantsGene:PGSC0003DMG402018963
PGSC:PGSC0003DMG402018963	EnsemblPlants:PGSC0003DMT400048805	PRINTS:PR00728	PANTHER:PTHR10806	PANTHER:PTHR10806:SF16	InterPro:Peptidase_S24_S26A/B/C
InterPro:Peptidase_S26B	MEROPS:S26.A04	SUPFAM:SSF51306	TIGRFAMs:TIGR02228	UniParc:UPI00029574B4	:

Description

Microsomal signal peptidase 18 kDa subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402018963]

Coordinates

chr12:-:5392505..5398568

Molecular Weight (calculated)

23098.4 Da

IEP (calculated)

10.498

GRAVY (calculated)

-0.055

Length

204 amino acids

Sequence
(BLAST)

001: MVSPYRSNSP FTFVPSRFLD FRPKGETERR KNGMDRRANR FDKVNSVQTT RMIVTSALII WKALMCVTGS ESPVVVVLSG SMEPGFKRGD ILFLHMSKDP
101: IRAGEIVVFN VDGREIPIVH RVIKVHERKD TGEVNVLTKG DNNFGDDRLL YAQGQLWLQR HHIMGRAVGF LPYVGWVTII MTEKPIIKYI LIGALGLLVI
201: TSKD

Best Arabidopsis Sequence Match ( AT1G52600.1 )
(BLAST)

001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD

Arabidopsis Description

Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.