CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
golgi 2
extracellular 1
endoplasmic reticulum 3
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	endoplasmic reticulum, golgi, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030372.1-P	Field mustard	endoplasmic reticulum	99.44	99.44
CDY65907	Canola	cytosol, endoplasmic reticulum, golgi	98.33	98.33
CDY40147	Canola	cytosol, endoplasmic reticulum, golgi	98.33	98.33
CDX87924	Canola	endoplasmic reticulum	97.78	97.78
AT1G52600.1	Thale cress	endoplasmic reticulum	97.22	97.22
KRH56207	Soybean	endoplasmic reticulum	93.89	93.89
Solyc12g006540.1.1	Tomato	nucleus	92.78	92.78
VIT_09s0002g06550.t01	Wine grape	endoplasmic reticulum	91.67	91.67
CDY70157	Canola	endoplasmic reticulum, golgi, vacuole	77.78	91.5
CDY20147	Canola	endoplasmic reticulum	91.11	91.11
CDY21864	Canola	endoplasmic reticulum	91.11	91.11
CDY47542	Canola	endoplasmic reticulum	89.44	89.44
KRH02723	Soybean	endoplasmic reticulum	92.78	87.43
GSMUA_Achr2P06860_001	Banana	endoplasmic reticulum	86.67	86.67
CDY30100	Canola	cytosol, endoplasmic reticulum, golgi	85.56	85.56
CDX97698	Canola	cytosol, endoplasmic reticulum, golgi	85.56	85.56
Os05t0297900-01	Rice	plasma membrane	85.56	85.56
Os06t0273800-02	Rice	endoplasmic reticulum, golgi, plasma membrane	85.0	85.0
EES19438	Sorghum	endoplasmic reticulum	84.44	84.44
Zm00001d009866_P004	Maize	endoplasmic reticulum	83.89	83.89
Zm00001d037926_P001	Maize	endoplasmic reticulum	83.89	83.89
EES16720	Sorghum	plasma membrane	82.22	82.22
GSMUA_Achr8P30160_001	Banana	plasma membrane	80.56	80.56
PGSC0003DMT400048805	Potato	plastid	81.67	72.06
CDY47544	Canola	extracellular	48.89	71.54
HORVU1Hr1G057530.2	Barley	endoplasmic reticulum, plasma membrane, plastid	82.78	69.63
EES07797	Sorghum	endoplasmic reticulum	67.22	66.48
HORVU5Hr1G109380.2	Barley	cytosol, golgi, plasma membrane, plastid	81.67	60.0
CDX87773	Canola	golgi	22.22	59.7
CDY37720	Canola	extracellular	18.89	55.74
CDX98638	Canola	extracellular	18.89	55.74
Zm00001d032189_P001	Maize	extracellular, mitochondrion	20.56	46.25
Zm00001d051850_P001	Maize	endoplasmic reticulum	65.56	36.99
CDY30660	Canola	plasma membrane	37.22	26.59
CDX87925	Canola	cytosol	5.56	5.95

Protein Annotations

MapMan:18.10.1.1.1	GO:A0A078J9U9	UniProt:A0A078J9U9	EnsemblPlants:CDY60554	ProteinID:CDY60554	ProteinID:CDY60554.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006465	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00029754001	InterPro:LexA/Signal_pep-like_sf	PFAM:PF00717	PRINTS:PR00728	PANTHER:PTHR10806
PANTHER:PTHR10806:SF16	InterPro:Peptidase_S24_S26A/B/C	InterPro:Peptidase_S26B	SUPFAM:SSF51306	TIGRFAMs:TIGR02228	TMHMM:TMhelix
UniParc:UPI0004EF1D4F	:	:	:	:	:

Description

BnaA05g35730DSignal peptidase I [Source:UniProtKB/TrEMBL;Acc:A0A078J9U9]

Coordinates

chrLK033892:+:16800..18440

Molecular Weight (calculated)

20033.8 Da

IEP (calculated)

7.162

GRAVY (calculated)

0.267

Length

180 amino acids

Sequence
(BLAST)

001: MGWIGETIDS IKSIQIRQLL TQAISLGMIV TSALIIWKTL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGDV DVLTKGDNNY GDDRLLYAEG QQWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD

Best Arabidopsis Sequence Match ( AT1G52600.1 )
(BLAST)

001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD

Arabidopsis Description

Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.