CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37720	Canola	extracellular	11.9	49.18
CDX98638	Canola	extracellular	11.51	47.54
CDX87773	Canola	golgi	12.3	46.27
CDY47544	Canola	extracellular	18.65	38.21
CDX87924	Canola	endoplasmic reticulum	26.98	37.78
CDY70157	Canola	endoplasmic reticulum, golgi, vacuole	22.62	37.25
CDY60554	Canola	endoplasmic reticulum	26.59	37.22
CDY40147	Canola	cytosol, endoplasmic reticulum, golgi	26.19	36.67
CDY65907	Canola	cytosol, endoplasmic reticulum, golgi	26.19	36.67
CDY20147	Canola	endoplasmic reticulum	25.79	36.11
CDY21864	Canola	endoplasmic reticulum	25.79	36.11
CDY47542	Canola	endoplasmic reticulum	25.4	35.56
GSMUA_Achr2P06860_001	Banana	endoplasmic reticulum	25.4	35.56
Os05t0297900-01	Rice	plasma membrane	24.6	34.44
GSMUA_Achr8P30160_001	Banana	plasma membrane	24.6	34.44
CDX97698	Canola	cytosol, endoplasmic reticulum, golgi	24.21	33.89
Os06t0273800-02	Rice	endoplasmic reticulum, golgi, plasma membrane	24.21	33.89
CDY30100	Canola	cytosol, endoplasmic reticulum, golgi	23.81	33.33
Zm00001d009866_P004	Maize	endoplasmic reticulum	23.81	33.33
EES16720	Sorghum	plasma membrane	23.81	33.33
EES07797	Sorghum	endoplasmic reticulum	23.81	32.97
Zm00001d037926_P001	Maize	endoplasmic reticulum	23.41	32.78
EES19438	Sorghum	endoplasmic reticulum	23.41	32.78
HORVU1Hr1G057530.2	Barley	endoplasmic reticulum, plasma membrane, plastid	24.6	28.97
HORVU5Hr1G109380.2	Barley	cytosol, golgi, plasma membrane, plastid	25.4	26.12
Zm00001d051850_P001	Maize	endoplasmic reticulum	23.02	18.18
Zm00001d032189_P001	Maize	extracellular, mitochondrion	4.37	13.75
CDX87925	Canola	cytosol	1.98	2.98

Protein Annotations

MapMan:18.10.1.1.1	GO:A0A078GW09	UniProt:A0A078GW09	EnsemblPlants:CDY30660	ProteinID:CDY30660	ProteinID:CDY30660.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006465	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00045975001	PANTHER:PTHR10806	PANTHER:PTHR10806:SF16	InterPro:Peptidase_S26B	TMHMM:TMhelix	UniParc:UPI0004EE9D88

Description

BnaC06g10240DBnaC06g10240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW09]

Coordinates

chrLK032257:-:215897..217181

Molecular Weight (calculated)

28041.4 Da

IEP (calculated)

8.497

GRAVY (calculated)

0.104

Length

252 amino acids

Sequence
(BLAST)

001: MEHQALQLTQ PPYIFGLPCQ ISRDDDVSWC ANRTFKILLK NINSTKEVTH RIGAMPQELA LAVPVTTRMV LNPKIEGKDD ESDGWLLDRC IPTVKPSSAS
101: LCNQKKSLRV RSQAQGMIAT SAFIIWKALM FVTGTESPIV VVLSASMGPG FKWVTGLISP FFLVSFPVIL GLSPTFFCLL KNCVILIVHR AIKVHERENA
201: EEEDDVLTKG AGSAEEARNN SKGGMCRCCT LLLFNLLAVW LKDFITSTHR YR

Best Arabidopsis Sequence Match ( AT1G52600.1 )
(BLAST)

001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD

Arabidopsis Description

Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.