Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 3
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65907 | Canola | cytosol, endoplasmic reticulum, golgi | 98.33 | 98.33 |
| CDY40147 | Canola | cytosol, endoplasmic reticulum, golgi | 98.33 | 98.33 |
| CDY60554 | Canola | endoplasmic reticulum | 97.78 | 97.78 |
| AT1G52600.1 | Thale cress | endoplasmic reticulum | 97.22 | 97.22 |
| KRH56207 | Soybean | endoplasmic reticulum | 93.89 | 93.89 |
| Solyc12g006540.1.1 | Tomato | nucleus | 92.78 | 92.78 |
| CDY70157 | Canola | endoplasmic reticulum, golgi, vacuole | 78.33 | 92.16 |
| VIT_09s0002g06550.t01 | Wine grape | endoplasmic reticulum | 91.67 | 91.67 |
| CDY20147 | Canola | endoplasmic reticulum | 90.0 | 90.0 |
| CDY47542 | Canola | endoplasmic reticulum | 90.0 | 90.0 |
| CDY21864 | Canola | endoplasmic reticulum | 90.0 | 90.0 |
| KRH02723 | Soybean | endoplasmic reticulum | 92.78 | 87.43 |
| GSMUA_Achr2P06860_001 | Banana | endoplasmic reticulum | 86.67 | 86.67 |
| Os05t0297900-01 | Rice | plasma membrane | 85.56 | 85.56 |
| EES19438 | Sorghum | endoplasmic reticulum | 85.0 | 85.0 |
| Os06t0273800-02 | Rice | endoplasmic reticulum, golgi, plasma membrane | 85.0 | 85.0 |
| CDX97698 | Canola | cytosol, endoplasmic reticulum, golgi | 85.0 | 85.0 |
| CDY30100 | Canola | cytosol, endoplasmic reticulum, golgi | 85.0 | 85.0 |
| Zm00001d037926_P001 | Maize | endoplasmic reticulum | 84.44 | 84.44 |
| Zm00001d009866_P004 | Maize | endoplasmic reticulum | 84.44 | 84.44 |
| EES16720 | Sorghum | plasma membrane | 82.78 | 82.78 |
| GSMUA_Achr8P30160_001 | Banana | plasma membrane | 80.56 | 80.56 |
| PGSC0003DMT400048805 | Potato | plastid | 82.22 | 72.55 |
| CDY47544 | Canola | extracellular | 49.44 | 72.36 |
| HORVU1Hr1G057530.2 | Barley | endoplasmic reticulum, plasma membrane, plastid | 82.22 | 69.16 |
| EES07797 | Sorghum | endoplasmic reticulum | 67.78 | 67.03 |
| CDX87773 | Canola | golgi | 22.78 | 61.19 |
| HORVU5Hr1G109380.2 | Barley | cytosol, golgi, plasma membrane, plastid | 81.67 | 60.0 |
| CDY37720 | Canola | extracellular | 19.44 | 57.38 |
| CDX98638 | Canola | extracellular | 19.44 | 57.38 |
| Zm00001d032189_P001 | Maize | extracellular, mitochondrion | 20.0 | 45.0 |
| Zm00001d051850_P001 | Maize | endoplasmic reticulum | 65.0 | 36.68 |
| CDY30660 | Canola | plasma membrane | 37.78 | 26.98 |
| CDX87925 | Canola | cytosol | 6.11 | 6.55 |
Protein Annotations
| MapMan:18.10.1.1.1 | GO:A0A078DHK9 | EnsemblPlants:CDX87924 | ProteinID:CDX87924 | ProteinID:CDX87924.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006465 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00147183001 | InterPro:LexA/Signal_pep-like_sf |
| PFAM:PF00717 | PRINTS:PR00728 | PANTHER:PTHR10806 | PANTHER:PTHR10806:SF16 | InterPro:Peptidase_S24_S26A/B/C | InterPro:Peptidase_S26B |
| SUPFAM:SSF51306 | TIGRFAMs:TIGR02228 | UniParc:UPI0004EEB553 | : | : | : |
Description
BnaC06g09860D
Coordinates
chrLK031852:+:1533607..1535066
Molecular Weight (calculated)
20107.9 Da
IEP (calculated)
6.799
GRAVY (calculated)
0.249
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWMGETIDS IKSIQIRQLL TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTEEV DVLTKGDNNY GDDRLLYAEG QQWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
101: VHERENTEEV DVLTKGDNNY GDDRLLYAEG QQWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
Arabidopsis Description
Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.