Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47542 | Canola | endoplasmic reticulum | 8.33 | 7.78 |
| CDX97698 | Canola | cytosol, endoplasmic reticulum, golgi | 7.14 | 6.67 |
| CDY30100 | Canola | cytosol, endoplasmic reticulum, golgi | 7.14 | 6.67 |
| Zm00001d009866_P004 | Maize | endoplasmic reticulum | 7.14 | 6.67 |
| CDX87924 | Canola | endoplasmic reticulum | 6.55 | 6.11 |
| EES19438 | Sorghum | endoplasmic reticulum | 6.55 | 6.11 |
| CDY65907 | Canola | cytosol, endoplasmic reticulum, golgi | 6.55 | 6.11 |
| CDY40147 | Canola | cytosol, endoplasmic reticulum, golgi | 6.55 | 6.11 |
| Zm00001d037926_P001 | Maize | endoplasmic reticulum | 6.55 | 6.11 |
| CDY21864 | Canola | endoplasmic reticulum | 6.55 | 6.11 |
| CDY20147 | Canola | endoplasmic reticulum | 6.55 | 6.11 |
| Os06t0273800-02 | Rice | endoplasmic reticulum, golgi, plasma membrane | 5.95 | 5.56 |
| CDY60554 | Canola | endoplasmic reticulum | 5.95 | 5.56 |
| EES16720 | Sorghum | plasma membrane | 5.95 | 5.56 |
| CDY70157 | Canola | endoplasmic reticulum, golgi, vacuole | 4.76 | 5.23 |
| Os05t0297900-01 | Rice | plasma membrane | 5.36 | 5.0 |
| CDX98638 | Canola | extracellular | 1.79 | 4.92 |
| GSMUA_Achr2P06860_001 | Banana | endoplasmic reticulum | 4.17 | 3.89 |
| GSMUA_Achr8P30160_001 | Banana | plasma membrane | 4.17 | 3.89 |
| EES07797 | Sorghum | endoplasmic reticulum | 4.17 | 3.85 |
| Zm00001d032189_P001 | Maize | extracellular, mitochondrion | 1.79 | 3.75 |
| HORVU1Hr1G057530.2 | Barley | endoplasmic reticulum, plasma membrane, plastid | 4.76 | 3.74 |
| HORVU5Hr1G109380.2 | Barley | cytosol, golgi, plasma membrane, plastid | 5.36 | 3.67 |
| CDX87773 | Canola | golgi | 1.19 | 2.99 |
| CDY30660 | Canola | plasma membrane | 2.98 | 1.98 |
| Zm00001d051850_P001 | Maize | endoplasmic reticulum | 3.57 | 1.88 |
| TraesCS6B01G363400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 1.79 | 1.78 |
| CDY37720 | Canola | extracellular | 0.6 | 1.64 |
| CDY47544 | Canola | extracellular | 1.19 | 1.63 |
| TraesCS6D01G311800.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 1.19 | 1.18 |
| TraesCS6D01G312200.1 | Wheat | golgi | 1.19 | 1.18 |
| TraesCS6D01G312400.1 | Wheat | endoplasmic reticulum, golgi | 0.6 | 0.66 |
| TraesCS6A01G334600.1 | Wheat | golgi | 0.6 | 0.59 |
| TraesCS6D01G313700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 0.6 | 0.59 |
| TraesCS3D01G089300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 0.6 | 0.59 |
| TraesCS6D01G314000.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS6A01G333000.2 | Wheat | extracellular, golgi | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX87925 | EnsemblPlantsGene:GSBRNA2T00147184001 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | PFAM:PF07734 | ProteinID:CDX87925 |
| ProteinID:CDX87925.1 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EED344 | MapMan:35.1 | : | : |
Description
BnaC06g09870D
Coordinates
chrLK031852:+:1535483..1535989
Molecular Weight (calculated)
19873.9 Da
IEP (calculated)
4.510
GRAVY (calculated)
-0.037
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLKGDTYWV AGDEEEIGFF LMKFDFTIER DFCVSLFRYR AFIFLDAKVL SVVRDEKLSL LHIDYRSRVM RIWVTNKIDD EDANKDLSWT SVFVLELDSV
101: KFKFNVENFL LDEENKVAVV CCTRDRDRTM VYIVGEDMYK QVYEDTRDAS PINWPLVFTC VPSLLCLH
101: KFKFNVENFL LDEENKVAVV CCTRDRDRTM VYIVGEDMYK QVYEDTRDAS PINWPLVFTC VPSLLCLH
001: MRKTMVISDL PHEIESEILS RVPTKSLAKL HTTCKRWYAL FRDPRFVKKN FGKSERRLML HSNFGVYKIT DDLHGILNSG DPSLEFTSKL SNLKISEDLT
101: ITKIFHCDGL ILCSTKENTR LVVWNPCTGQ TRWIKPSKRY RSDDSYCLGY VNSKSSYHNY KILRYCFYYN DQDACVSEFE IYDFSSESWR VLDDYCTREW
201: GLFCHGMSLK GNTYFVAGEK ETGFFMLYFD FKTERFERLP LPYQSFDSED TAVLSIVGGE KLAVLHQNIQ SFSNEMRIWV TNKIDEAKDL TWSNFFLAVD
301: YDIFNLPSVN NVTSFLLDEE NKVAVCCDRH IDDEDKTRIY IVGVDLYKEV YKERTKGAHF NWPLLISYLP SLVHIQEKYP KDKRKGNKRR LVKRIT
101: ITKIFHCDGL ILCSTKENTR LVVWNPCTGQ TRWIKPSKRY RSDDSYCLGY VNSKSSYHNY KILRYCFYYN DQDACVSEFE IYDFSSESWR VLDDYCTREW
201: GLFCHGMSLK GNTYFVAGEK ETGFFMLYFD FKTERFERLP LPYQSFDSED TAVLSIVGGE KLAVLHQNIQ SFSNEMRIWV TNKIDEAKDL TWSNFFLAVD
301: YDIFNLPSVN NVTSFLLDEE NKVAVCCDRH IDDEDKTRIY IVGVDLYKEV YKERTKGAHF NWPLLISYLP SLVHIQEKYP KDKRKGNKRR LVKRIT
Arabidopsis Description
Putative F-box/kelch-repeat protein At3g17540 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUP4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.