CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, cytosol

Predictor Summary:

plastid 2
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi
Any Predictor:	cytosol, endoplasmic reticulum, golgi, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027214.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	99.44	99.44
CDY30100	Canola	cytosol, endoplasmic reticulum, golgi	98.33	98.33
CDY20147	Canola	endoplasmic reticulum	88.89	88.89
CDY21864	Canola	endoplasmic reticulum	88.89	88.89
CDY40147	Canola	cytosol, endoplasmic reticulum, golgi	85.56	85.56
AT3G15710.1	Thale cress	endoplasmic reticulum	85.56	85.56
CDY60554	Canola	endoplasmic reticulum	85.56	85.56
CDY65907	Canola	cytosol, endoplasmic reticulum, golgi	85.56	85.56
KRH56207	Soybean	endoplasmic reticulum	85.0	85.0
CDX87924	Canola	endoplasmic reticulum	85.0	85.0
CDY70157	Canola	endoplasmic reticulum, golgi, vacuole	72.22	84.97
VIT_09s0002g06550.t01	Wine grape	endoplasmic reticulum	83.89	83.89
Solyc12g006540.1.1	Tomato	nucleus	83.33	83.33
CDY47542	Canola	endoplasmic reticulum	82.78	82.78
KRH02723	Soybean	endoplasmic reticulum	83.89	79.06
Os05t0297900-01	Rice	plasma membrane	78.89	78.89
GSMUA_Achr2P06860_001	Banana	endoplasmic reticulum	78.89	78.89
Zm00001d009866_P004	Maize	endoplasmic reticulum	77.22	77.22
EES19438	Sorghum	endoplasmic reticulum	76.67	76.67
Os06t0273800-02	Rice	endoplasmic reticulum, golgi, plasma membrane	76.67	76.67
EES16720	Sorghum	plasma membrane	76.11	76.11
Zm00001d037926_P001	Maize	endoplasmic reticulum	76.11	76.11
GSMUA_Achr8P30160_001	Banana	plasma membrane	75.56	75.56
PGSC0003DMT400048805	Potato	plastid	75.0	66.18
CDY47544	Canola	extracellular	45.0	65.85
HORVU1Hr1G057530.2	Barley	endoplasmic reticulum, plasma membrane, plastid	76.67	64.49
EES07797	Sorghum	endoplasmic reticulum	64.44	63.74
CDY37720	Canola	extracellular	19.44	57.38
CDX98638	Canola	extracellular	19.44	57.38
HORVU5Hr1G109380.2	Barley	cytosol, golgi, plasma membrane, plastid	75.56	55.51
CDX87773	Canola	golgi	19.44	52.24
Zm00001d032189_P001	Maize	extracellular, mitochondrion	20.56	46.25
Zm00001d051850_P001	Maize	endoplasmic reticulum	60.0	33.86
CDY30660	Canola	plasma membrane	33.89	24.21
CDX87925	Canola	cytosol	6.67	7.14

Protein Annotations

MapMan:18.10.1.1.1	GO:A0A078EEC2	EnsemblPlants:CDX97698	ProteinID:CDX97698	ProteinID:CDX97698.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006465	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00104946001	InterPro:LexA/Signal_pep-like_sf
PFAM:PF00717	PRINTS:PR00728	PANTHER:PTHR10806	PANTHER:PTHR10806:SF16	InterPro:Peptidase_S24_S26A/B/C	InterPro:Peptidase_S26B
MEROPS:S26.A03	SUPFAM:SSF51306	TIGRFAMs:TIGR02228	TMHMM:TMhelix	UniParc:UPI0004EDBBF3	:

Description

BnaA05g23810D

Coordinates

chrLK031900:-:1034649..1036097

Molecular Weight (calculated)

20039.1 Da

IEP (calculated)

7.726

GRAVY (calculated)

0.304

Length

180 amino acids

Sequence
(BLAST)

001: MGWIGETVDS IKSIKIRQLL TQAVTLGMIV TSALIIWKAM MCVTGTESPV VVVLSGSMEP GFQRGDILLL RMTKDPIRTG EIVVFKIDGR DIPIVHRVIE
101: VHERKTTGKV DVLTKGDNND VDDIDLYADG QMWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYLLIGA MGLLVITSKD

Best Arabidopsis Sequence Match ( AT3G15710.1 )
(BLAST)

001: MGFIGETVDS IKSIKIRQVL TQAITLGMIV TSALIIWKAL ICVTGSESPV VVVLSESMEP GFQRGDILFL RMTDEPIRAG EIVVFSVDGR EIPIVHRAIK
101: VHERGDTKAV DVLTKGDNND IDDIGLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD

Arabidopsis Description

Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:A0A178VNL0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.