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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 3
  • vacuole 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:plastid
MultiLoc:golgi
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_09s0002g06550.t01 Wine grape endoplasmic reticulum 96.67 96.67
AT1G52600.1 Thale cress endoplasmic reticulum 95.56 95.56
Bra018976.1-P Field mustard cytosol, endoplasmic reticulum, golgi 94.44 94.44
CDY65907 Canola cytosol, endoplasmic reticulum, golgi 94.44 94.44
Bra030372.1-P Field mustard endoplasmic reticulum 94.44 94.44
CDY40147 Canola cytosol, endoplasmic reticulum, golgi 94.44 94.44
Solyc12g006540.1.1 Tomato nucleus 93.89 93.89
CDY60554 Canola endoplasmic reticulum 93.89 93.89
CDX87924 Canola endoplasmic reticulum 93.89 93.89
KRH02723 Soybean endoplasmic reticulum 98.89 93.19
GSMUA_Achr2P06860_001 Banana endoplasmic reticulum 91.67 91.67
KRH09745 Soybean extracellular, golgi, vacuole 77.78 91.5
CDY70157 Canola endoplasmic reticulum, golgi, vacuole 77.78 91.5
Bra040958.1-P Field mustard endoplasmic reticulum, golgi, vacuole 76.67 90.2
CDY47542 Canola endoplasmic reticulum 88.89 88.89
CDY20147 Canola endoplasmic reticulum 88.33 88.33
CDY21864 Canola endoplasmic reticulum 88.33 88.33
Bra021131.1-P Field mustard endoplasmic reticulum 88.33 88.33
EES19438 Sorghum endoplasmic reticulum 87.78 87.78
Zm00001d037926_P001 Maize endoplasmic reticulum 87.22 87.22
AT3G15710.1 Thale cress endoplasmic reticulum 87.22 87.22
Os05t0297900-01 Rice plasma membrane 87.22 87.22
Os06t0273800-02 Rice endoplasmic reticulum, golgi, plasma membrane 87.22 87.22
Zm00001d009866_P004 Maize endoplasmic reticulum 86.11 86.11
Bra027214.1-P Field mustard cytosol, endoplasmic reticulum, golgi 85.56 85.56
CDX97698 Canola cytosol, endoplasmic reticulum, golgi 85.0 85.0
EES16720 Sorghum plasma membrane 85.0 85.0
CDY30100 Canola cytosol, endoplasmic reticulum, golgi 85.0 85.0
GSMUA_Achr8P30160_001 Banana plasma membrane 82.22 82.22
HORVU1Hr1G057530.2 Barley endoplasmic reticulum, plasma membrane, plastid 85.56 71.96
EES07797 Sorghum endoplasmic reticulum 68.89 68.13
HORVU5Hr1G109380.2 Barley cytosol, golgi, plasma membrane, plastid 85.0 62.45
KRH54892 Soybean cytosol, extracellular, plasma membrane 33.89 61.62
TraesCS6D01G314000.1 Wheat cytosol 40.56 51.77
TraesCS6A01G333000.2 Wheat extracellular, golgi 40.0 49.66
TraesCS6D01G312400.1 Wheat endoplasmic reticulum, golgi 41.67 49.34
TraesCS6D01G311800.1 Wheat endoplasmic reticulum, golgi, vacuole 45.56 48.52
TraesCS6D01G313700.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 45.56 48.52
TraesCS6A01G334600.1 Wheat golgi 45.0 47.93
TraesCS6B01G363400.1 Wheat endoplasmic reticulum, golgi, vacuole 45.0 47.93
TraesCS6D01G312200.1 Wheat golgi 43.89 46.75
Zm00001d032189_P001 Maize extracellular, mitochondrion 20.56 46.25
TraesCS3D01G089300.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 42.78 45.56
Zm00001d051850_P001 Maize endoplasmic reticulum 66.67 37.62
Protein Annotations
MapMan:18.10.1.1.1EMBL:ACUP02004106EnsemblPlantsGene:GLYMA_06G310200GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005787GO:GO:0006465
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016787GO:GO:0019538UniProt:I1KFJ2EnsemblPlants:KRH56207ProteinID:KRH56207
ProteinID:KRH56207.1InterPro:LexA/Signal_pep-like_sfPFAM:PF00717PRINTS:PR00728PANTHER:PTHR10806PANTHER:PTHR10806:SF16
InterPro:Peptidase_S24_S26A/B/CInterPro:Peptidase_S26BMEROPS:S26.010SUPFAM:SSF51306TIGRFAMs:TIGR02228TMHMM:TMhelix
UniParc:UPI0000E649E0:::::
Description
hypothetical protein
Coordinates
chr6:+:49870214..49873071
Molecular Weight (calculated)
19974.8 Da
IEP (calculated)
7.162
GRAVY (calculated)
0.317
Length
180 amino acids
Sequence
(BLAST)
001: MGWIGETVDS IKSLQIRQVL TQAVSLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR EIPIVHRVIK
101: VHEREDTGEV DVLTKGDNNY GDDRLLYAHG QLWLQRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
Best Arabidopsis Sequence Match ( AT1G52600.1 )
(BLAST)
001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
Arabidopsis Description
Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.