Factsheet for TraesCS6D01G312200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G312400.1	Wheat	endoplasmic reticulum, golgi	88.76	98.68
TraesCS6D01G311800.1	Wheat	endoplasmic reticulum, golgi, vacuole	95.27	95.27
TraesCS6A01G333000.2	Wheat	extracellular, golgi	78.11	91.03
TraesCS6B01G363400.1	Wheat	endoplasmic reticulum, golgi, vacuole	90.53	90.53
TraesCS3D01G089300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	84.02	84.02
TraesCS6D01G313700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	82.84	82.84
TraesCS6D01G314000.1	Wheat	cytosol	68.64	82.27
Bra040958.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	40.24	44.44
TraesCS1D01G238300.1	Wheat	endoplasmic reticulum	47.34	44.44
KRH09745	Soybean	extracellular, golgi, vacuole	40.24	44.44
KRH56207	Soybean	endoplasmic reticulum	46.75	43.89
VIT_09s0002g06550.t01	Wine grape	endoplasmic reticulum	45.56	42.78
Solyc12g006540.1.1	Tomato	nucleus	45.56	42.78
TraesCS5D01G466200.1	Wheat	endoplasmic reticulum	44.97	42.22
Bra021131.1-P	Field mustard	endoplasmic reticulum	44.97	42.22
AT3G15710.1	Thale cress	endoplasmic reticulum	44.97	42.22
AT1G52600.1	Thale cress	endoplasmic reticulum	44.38	41.67
Bra018976.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	44.38	41.67
Bra030372.1-P	Field mustard	endoplasmic reticulum	43.79	41.11
KRH02723	Soybean	endoplasmic reticulum	46.15	40.84
Bra027214.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	42.6	40.0
VIT_11s0016g05130.t01	Wine grape	cytosol, golgi, plasma membrane	41.42	38.89
PGSC0003DMT400048805	Potato	plastid	45.56	37.75
KRH54892	Soybean	cytosol, extracellular, plasma membrane	17.75	30.3
CDX87925	Canola	cytosol	1.18	1.19

Protein Annotations

MapMan:18.10.1.1.1	Gene3D:2.10.109.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006465
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
GO:GO:0019538	InterPro:LexA/Signal_pep-like_sf	PFAM:PF00717	PRINTS:PR00728	PANTHER:PTHR10806	PANTHER:PTHR10806:SF16
InterPro:Peptidase_S24_S26A/B/C	InterPro:Peptidase_S26B	SUPFAM:SSF51306	TIGRFAMs:TIGR02228	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G312200
EnsemblPlants:TraesCS6D01G312200.1	TIGR:cd06530	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:421661816..421662894

Molecular Weight (calculated)

19131.7 Da

IEP (calculated)

7.183

GRAVY (calculated)

0.222

Length

169 amino acids

Sequence
(BLAST)

001: MKIRHVLTRS ITFLVMVLVL LVLVPEGMML VTGVKSPAMA VLSESMEPAI KKGDMVFVHN MSNEPFREGE VVLFKVDGFE HLIVHRVIKV YEHRDTREIR
101: ILTKGDNNSV DDRFLYASGQ LWLQPHDIIG RVAGYLPYAG WPSVFISEAY KMLLNGGSTT TPEVLWVTM

Best Arabidopsis Sequence Match ( AT1G52600.1 )
(BLAST)

001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD

Arabidopsis Description

Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.