Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G312400.1 | Wheat | endoplasmic reticulum, golgi | 82.25 | 91.45 |
| TraesCS6D01G311800.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 91.12 | 91.12 |
| TraesCS6D01G312200.1 | Wheat | golgi | 90.53 | 90.53 |
| TraesCS6A01G333000.2 | Wheat | extracellular, golgi | 73.37 | 85.52 |
| Bra040958.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 41.42 | 45.75 |
| KRH09745 | Soybean | extracellular, golgi, vacuole | 40.83 | 45.1 |
| TraesCS1B01G249800.1 | Wheat | endoplasmic reticulum | 47.93 | 45.0 |
| KRH56207 | Soybean | endoplasmic reticulum | 47.93 | 45.0 |
| VIT_09s0002g06550.t01 | Wine grape | endoplasmic reticulum | 46.75 | 43.89 |
| Solyc12g006540.1.1 | Tomato | nucleus | 46.75 | 43.89 |
| AT3G15710.1 | Thale cress | endoplasmic reticulum | 46.15 | 43.33 |
| TraesCS5B01G463200.1 | Wheat | golgi | 46.15 | 43.33 |
| Bra021131.1-P | Field mustard | endoplasmic reticulum | 46.15 | 43.33 |
| Bra018976.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 45.56 | 42.78 |
| AT1G52600.1 | Thale cress | endoplasmic reticulum | 45.56 | 42.78 |
| Bra030372.1-P | Field mustard | endoplasmic reticulum | 44.97 | 42.22 |
| KRH02723 | Soybean | endoplasmic reticulum | 47.34 | 41.88 |
| Bra027214.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 43.79 | 41.11 |
| VIT_11s0016g05130.t01 | Wine grape | cytosol, golgi, plasma membrane | 43.79 | 41.11 |
| PGSC0003DMT400048805 | Potato | plastid | 46.15 | 38.24 |
| KRH54892 | Soybean | cytosol, extracellular, plasma membrane | 18.34 | 31.31 |
| CDX87925 | Canola | cytosol | 1.78 | 1.79 |
Protein Annotations
| MapMan:18.10.1.1.1 | Gene3D:2.10.109.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006465 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:LexA/Signal_pep-like_sf | PFAM:PF00717 | PRINTS:PR00728 | PANTHER:PTHR10806 | PANTHER:PTHR10806:SF16 |
| InterPro:Peptidase_S24_S26A/B/C | InterPro:Peptidase_S26B | SUPFAM:SSF51306 | TIGRFAMs:TIGR02228 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6B01G363400 |
| EnsemblPlants:TraesCS6B01G363400.1 | TIGR:cd06530 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:634502882..634503969
Molecular Weight (calculated)
18948.2 Da
IEP (calculated)
6.392
GRAVY (calculated)
0.191
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIRHVLTQS ITFLVMVFAL FVLMPEGMVL VTGVKSPAMA VLSESMEPAI KKGDMVFVHN MSNAPFREGE IVLFRVDGFE HPIVHRVIKV QEHRDTGETQ
101: ILTKGDNNSV DDHFLYASGQ LWLQPHDIIG RVAGYLPYAG WPSVFISEAY KMLLNSGSTT TPEVLWVTM
101: ILTKGDNNSV DDHFLYASGQ LWLQPHDIIG RVAGYLPYAG WPSVFISEAY KMLLNSGSTT TPEVLWVTM
001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
Arabidopsis Description
Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.