CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 1
golgi 2
extracellular 1
endoplasmic reticulum 3
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021131.1-P	Field mustard	endoplasmic reticulum	100.0	100.0
CDY20147	Canola	endoplasmic reticulum	100.0	100.0
CDY60554	Canola	endoplasmic reticulum	91.11	91.11
CDY65907	Canola	cytosol, endoplasmic reticulum, golgi	90.56	90.56
CDY40147	Canola	cytosol, endoplasmic reticulum, golgi	90.56	90.56
CDX87924	Canola	endoplasmic reticulum	90.0	90.0
CDY30100	Canola	cytosol, endoplasmic reticulum, golgi	89.44	89.44
AT3G15710.1	Thale cress	endoplasmic reticulum	89.44	89.44
CDX97698	Canola	cytosol, endoplasmic reticulum, golgi	88.89	88.89
KRH56207	Soybean	endoplasmic reticulum	88.33	88.33
Solyc12g006540.1.1	Tomato	nucleus	86.67	86.67
CDY70157	Canola	endoplasmic reticulum, golgi, vacuole	73.33	86.27
VIT_09s0002g06550.t01	Wine grape	endoplasmic reticulum	86.11	86.11
CDY47542	Canola	endoplasmic reticulum	85.0	85.0
KRH02723	Soybean	endoplasmic reticulum	87.22	82.2
GSMUA_Achr2P06860_001	Banana	endoplasmic reticulum	81.11	81.11
Os05t0297900-01	Rice	plasma membrane	80.56	80.56
EES19438	Sorghum	endoplasmic reticulum	78.89	78.89
Os06t0273800-02	Rice	endoplasmic reticulum, golgi, plasma membrane	78.89	78.89
Zm00001d009866_P004	Maize	endoplasmic reticulum	78.33	78.33
Zm00001d037926_P001	Maize	endoplasmic reticulum	78.33	78.33
EES16720	Sorghum	plasma membrane	77.22	77.22
GSMUA_Achr8P30160_001	Banana	plasma membrane	77.22	77.22
PGSC0003DMT400048805	Potato	plastid	77.78	68.63
CDY47544	Canola	extracellular	46.67	68.29
HORVU1Hr1G057530.2	Barley	endoplasmic reticulum, plasma membrane, plastid	77.78	65.42
EES07797	Sorghum	endoplasmic reticulum	65.0	64.29
CDY37720	Canola	extracellular	19.44	57.38
CDX98638	Canola	extracellular	19.44	57.38
HORVU5Hr1G109380.2	Barley	cytosol, golgi, plasma membrane, plastid	77.78	57.14
CDX87773	Canola	golgi	21.11	56.72
Zm00001d032189_P001	Maize	extracellular, mitochondrion	20.0	45.0
Zm00001d051850_P001	Maize	endoplasmic reticulum	61.67	34.8
CDY30660	Canola	plasma membrane	36.11	25.79
CDX87925	Canola	cytosol	6.11	6.55

Protein Annotations

MapMan:18.10.1.1.1	GO:A0A078G598	UniProt:A0A078G598	ProteinID:CDY20147.1	EnsemblPlants:CDY21864	ProteinID:CDY21864
ProteinID:CDY21864.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006465	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00018168001	InterPro:LexA/Signal_pep-like_sf	PFAM:PF00717
PRINTS:PR00728	ScanProsite:PS00761	PANTHER:PTHR10806	PANTHER:PTHR10806:SF16	InterPro:Pept_S26A_signal_pept_1_CS	InterPro:Peptidase_S24_S26A/B/C
InterPro:Peptidase_S26B	MEROPS:S26.A03	SUPFAM:SSF51306	TIGRFAMs:TIGR02228	TMHMM:TMhelix	UniParc:UPI0002543DA8

Description

BnaC01g35840DSignal peptidase I [Source:UniProtKB/TrEMBL;Acc:A0A078G598]

Coordinates

chrLK032125:-:372890..374462

Molecular Weight (calculated)

19957.8 Da

IEP (calculated)

7.214

GRAVY (calculated)

0.346

Length

180 amino acids

Sequence
(BLAST)

001: MGWIGETVDS IKSIKIRQLL TQAITLGMIV TSALIIWKCL MCVTGTESPV VVVLSGSMEP GFKRGDILFL HMTKEPIRAG EIVVFNVDGR DIPIVHRAIK
101: VHERENTGHV DVLTKGDNND VDDIGLYADG QFWLHRHHIM GRAVGFLPYV GWVTIIMSEK PIIKYILIGA LGLLVITSKD

Best Arabidopsis Sequence Match ( AT1G52600.1 )
(BLAST)

001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD

Arabidopsis Description

Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.