Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93221 | Canola | cytosol | 45.26 | 86.0 |
| AT2G39960.1 | Thale cress | cytosol, golgi, plasma membrane | 82.11 | 81.25 |
| CDX93220 | Canola | cytosol | 32.63 | 71.26 |
| Solyc04g072110.2.1 | Tomato | cytosol | 22.11 | 70.0 |
| KRH73149 | Soybean | endoplasmic reticulum | 65.26 | 67.39 |
| KRH14989 | Soybean | endoplasmic reticulum, mitochondrion | 64.21 | 66.3 |
| CDY07043 | Canola | cytosol | 34.74 | 64.08 |
| CDY20504 | Canola | cytosol | 32.63 | 63.27 |
| GSMUA_Achr5P23170_001 | Banana | golgi, peroxisome, plastid | 59.47 | 62.43 |
| PGSC0003DMT400064539 | Potato | golgi | 62.63 | 62.3 |
| GSMUA_Achr7P18540_001 | Banana | golgi, peroxisome, plasma membrane | 60.53 | 62.16 |
| VIT_13s0019g03400.t01 | Wine grape | plasma membrane | 62.11 | 60.51 |
| OQU81657 | Sorghum | plasma membrane | 56.32 | 55.73 |
| Os04t0446300-01 | Rice | plasma membrane, plastid | 55.79 | 55.21 |
| Zm00001d020624_P002 | Maize | plastid | 20.0 | 53.52 |
| Os02t0565200-01 | Rice | golgi, plasma membrane, plastid | 53.16 | 52.88 |
| TraesCS2A01G314500.1 | Wheat | golgi | 52.63 | 52.08 |
| TraesCS2B01G332900.1 | Wheat | golgi | 52.63 | 52.08 |
| TraesCS2D01G312700.1 | Wheat | plasma membrane | 52.11 | 51.56 |
| Zm00001d013600_P001 | Maize | cytosol | 19.47 | 49.33 |
| HORVU2Hr1G078290.3 | Barley | golgi, mitochondrion, plastid | 53.16 | 46.76 |
| HORVU4Hr1G058460.1 | Barley | golgi | 12.63 | 23.53 |
Protein Annotations
| MapMan:18.10.1.1.3 | EntrezGene:825735 | ProteinID:AEE82373.1 | ArrayExpress:AT4G04200 | EnsemblPlantsGene:AT4G04200 | RefSeq:AT4G04200 |
| TAIR:AT4G04200 | RefSeq:AT4G04200-TAIR-G | EnsemblPlants:AT4G04200.1 | TAIR:AT4G04200.1 | UniProt:F4JGB4 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005787 | GO:GO:0006465 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0045047 |
| RefSeq:NP_192329.2 | PFAM:PF06703 | PO:PO:0000293 | PO:PO:0025281 | PANTHER:PTHR13085 | InterPro:SigPept_cplx_su2 |
| TMHMM:TMhelix | UniParc:UPI000034F1D1 | : | : | : | : |
Description
Microsomal signal peptidase 25 kDa subunit (SPC25) [Source:UniProtKB/TrEMBL;Acc:F4JGB4]
Coordinates
chr4:+:2027165..2029013
Molecular Weight (calculated)
21228.9 Da
IEP (calculated)
9.254
GRAVY (calculated)
0.032
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKKTESAT KNVKKVNLLD HIAIKHLLDE SVSDIVTSRG YKEDVRLSNV KFLLGGIIIV VALVAQFYNK KCGICLLLDF GKYVVLTAVM QLILYIKEKN
101: AILFTYPLEG SFTSTGLVVS SKLPRFSDQY TLTIDSADPQ SISAGKSVQF TKSVTQWLTK DGVLVEGLFW KDVEALVKEY TEAGEPKKKR
101: AILFTYPLEG SFTSTGLVVS SKLPRFSDQY TLTIDSADPQ SISAGKSVQF TKSVTQWLTK DGVLVEGLFW KDVEALVKEY TEAGEPKKKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.