Factsheet for GSMUA_Achr7P18540_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

plastid 1
golgi 1
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P06860_001
GSMUA_Achr4P10230_001
GSMUA_Achr8P30160_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39960.1	GSMUA_Achr2P06860_001	AT3G15710.1	21798944
AT2G39960.1	GSMUA_Achr8P30160_001	AT3G15710.1	21798944
AT2G39960.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	86.49	88.4
KRH73149	Soybean	endoplasmic reticulum	78.38	78.8
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	77.3	77.72
CDY07042	Canola	cytosol	40.54	75.0
PGSC0003DMT400064539	Potato	golgi	76.76	74.35
CDX93221	Canola	cytosol	40.0	74.0
Os04t0446300-01	Rice	plasma membrane, plastid	74.59	71.88
VIT_13s0019g03400.t01	Wine grape	plasma membrane	75.68	71.79
Solyc04g072110.2.1	Tomato	cytosol	23.24	71.67
OQU81657	Sorghum	plasma membrane	74.05	71.35
TraesCS2A01G314500.1	Wheat	golgi	73.51	70.83
TraesCS2D01G312700.1	Wheat	plasma membrane	72.97	70.31
TraesCS2B01G332900.1	Wheat	golgi	72.97	70.31
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	71.89	69.63
CDY20503	Canola	endoplasmic reticulum	43.24	68.38
AT2G39960.1	Thale cress	cytosol, golgi, plasma membrane	70.81	68.23
CDY60993	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.27	67.36
Bra004998.1-P	Field mustard	cytosol	70.27	65.66
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	74.05	63.43
CDX74817	Canola	cytosol	70.81	62.68
CDY24940	Canola	cytosol	63.78	61.46
CDY24935	Canola	cytosol	63.78	61.46
CDX93220	Canola	cytosol	28.65	60.92
AT4G04200.1	Thale cress	cytosol, golgi, plasma membrane	62.16	60.53
Zm00001d020624_P002	Maize	plastid	22.7	59.15
CDY07043	Canola	cytosol	31.35	56.31
Zm00001d013600_P001	Maize	cytosol	22.7	56.0
CDY20504	Canola	cytosol	28.65	54.08
Bra017043.1-P	Field mustard	cytosol	52.43	44.7
HORVU4Hr1G058460.1	Barley	golgi	22.16	40.2

Protein Annotations

MapMan:18.10.1.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr7G18540_001	EnsemblPlants:GSMUA_Achr7P18540_001	EnsemblPlants:GSMUA_Achr7T18540_001	UniProt:M0TIP1	PFAM:PF06703	PANTHER:PTHR13085
InterPro:SigPept_cplx_su2	TMHMM:TMhelix	UniParc:UPI0002969358	SEG:seg	:	:

Description

Probable signal peptidase complex subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G18540_001]

Coordinates

chr7:-:21311894..21315855

Molecular Weight (calculated)

20652.0 Da

IEP (calculated)

9.928

GRAVY (calculated)

-0.065

Length

185 amino acids

Sequence
(BLAST)

001: MASGSAAKNP KKTNLLDHHS IKHLLDESVT EVVKSRGYAE DSRLSNVRLL IGSIIIAIAL LAQFYPKKFP ENRDFLIVCI GLYPSFHFVF ISYTKEKNAI
101: LFTYPPAGSF NSTGLVVSSK LPRFSDMYTL TIASADPKSI SANKPVVLTK SVTKWFTKDG VLVEGLFWKD VEKLIDDYNG DRKSK

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.