CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07042	Canola	cytosol	47.15	91.0
CDX93221	Canola	cytosol	46.63	90.0
CDX93220	Canola	cytosol	39.9	88.51
CDY24935	Canola	cytosol	87.05	87.5
CDY24940	Canola	cytosol	87.05	87.5
CDY20504	Canola	cytosol	41.45	81.63
CDX74817	Canola	cytosol	87.05	80.38
CDY20503	Canola	endoplasmic reticulum	48.19	79.49
CDY07043	Canola	cytosol	41.45	77.67
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	73.06	76.63
KRH73149	Soybean	endoplasmic reticulum	72.54	76.09
Solyc04g072110.2.1	Tomato	cytosol	22.28	71.67
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	67.36	70.27
PGSC0003DMT400064539	Potato	golgi	68.39	69.11
VIT_13s0019g03400.t01	Wine grape	plasma membrane	68.39	67.69
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	63.21	67.4
OQU81657	Sorghum	plasma membrane	61.14	61.46
Os04t0446300-01	Rice	plasma membrane, plastid	60.62	60.94
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	60.1	60.73
TraesCS2A01G314500.1	Wheat	golgi	57.51	57.81
TraesCS2B01G332900.1	Wheat	golgi	56.99	57.29
TraesCS2D01G312700.1	Wheat	plasma membrane	56.99	57.29
Zm00001d020624_P002	Maize	plastid	19.69	53.52
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	58.03	51.85
Zm00001d013600_P001	Maize	cytosol	19.69	50.67
HORVU4Hr1G058460.1	Barley	golgi	16.58	31.37

Protein Annotations

KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MapMan:18.10.1.1.3	GO:A0A078JA09
UniProt:A0A078JA09	EnsemblPlants:CDY60993	ProteinID:CDY60993	ProteinID:CDY60993.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005787
GO:GO:0006465	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00030381001	PFAM:PF06703	PANTHER:PTHR13085
InterPro:SigPept_cplx_su2	TMHMM:TMhelix	UniParc:UPI0004EF11ED	SEG:seg	:	:

Description

BnaA03g56570DBnaA03g56570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA09]

Coordinates

chrLK033943:+:20878..22737

Molecular Weight (calculated)

22043.7 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.222

Length

193 amino acids

Sequence
(BLAST)

001: MEEKKEESKN KNVKKANLLD HNSIKHILDE SVSDIVTSHG YKEDVRLSNL KLFLGAIIIV VALVAQFYNK KFPENRDFLI GCIALYPFYI RLIRVLILYT
101: KEKNAILFTY PPQGSFTSTG LVVSSKLPRF SDEYTLTIDS ADPKSISAGK SVQFTKSVTQ WFTKDGVLVE GLFWKDVEAL IKDYAKEEPK KKR

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.