Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g072110.2.1 | Tomato | cytosol | 30.89 | 98.33 |
| KRH73149 | Soybean | endoplasmic reticulum | 76.44 | 79.35 |
| KRH14989 | Soybean | endoplasmic reticulum, mitochondrion | 75.39 | 78.26 |
| CDY07042 | Canola | cytosol | 40.84 | 78.0 |
| GSMUA_Achr7P18540_001 | Banana | golgi, peroxisome, plasma membrane | 74.35 | 76.76 |
| CDX93221 | Canola | cytosol | 39.79 | 76.0 |
| GSMUA_Achr5P23170_001 | Banana | golgi, peroxisome, plastid | 71.73 | 75.69 |
| VIT_13s0019g03400.t01 | Wine grape | plasma membrane | 75.39 | 73.85 |
| AT2G39960.1 | Thale cress | cytosol, golgi, plasma membrane | 70.68 | 70.31 |
| CDY20503 | Canola | endoplasmic reticulum | 42.93 | 70.09 |
| CDY60993 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 69.11 | 68.39 |
| Bra004998.1-P | Field mustard | cytosol | 69.11 | 66.67 |
| Os04t0446300-01 | Rice | plasma membrane, plastid | 66.49 | 66.15 |
| TraesCS2A01G314500.1 | Wheat | golgi | 66.49 | 66.15 |
| CDY24935 | Canola | cytosol | 65.97 | 65.62 |
| CDY24940 | Canola | cytosol | 65.97 | 65.62 |
| TraesCS2B01G332900.1 | Wheat | golgi | 65.97 | 65.62 |
| TraesCS2D01G312700.1 | Wheat | plasma membrane | 65.97 | 65.62 |
| OQU81657 | Sorghum | plasma membrane | 65.44 | 65.1 |
| Os02t0565200-01 | Rice | golgi, plasma membrane, plastid | 63.87 | 63.87 |
| CDX74817 | Canola | cytosol | 69.63 | 63.64 |
| AT4G04200.1 | Thale cress | cytosol, golgi, plasma membrane | 62.3 | 62.63 |
| CDX93220 | Canola | cytosol | 28.27 | 62.07 |
| HORVU2Hr1G078290.3 | Barley | golgi, mitochondrion, plastid | 66.49 | 58.8 |
| CDY07043 | Canola | cytosol | 30.89 | 57.28 |
| CDY20504 | Canola | cytosol | 28.27 | 55.1 |
| Zm00001d020624_P002 | Maize | plastid | 20.42 | 54.93 |
| Zm00001d013600_P001 | Maize | cytosol | 19.9 | 50.67 |
| Bra017043.1-P | Field mustard | cytosol | 52.88 | 46.54 |
| HORVU4Hr1G058460.1 | Barley | golgi | 19.9 | 37.25 |
Protein Annotations
| EntrezGene:102581003 | MapMan:18.10.1.1.3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | UniProt:M1CCJ2 | PFAM:PF06703 | EnsemblPlantsGene:PGSC0003DMG400025078 | PGSC:PGSC0003DMG400025078 | EnsemblPlants:PGSC0003DMT400064539 |
| PANTHER:PTHR13085 | InterPro:SigPept_cplx_su2 | TMHMM:TMhelix | UniParc:UPI0002956EF7 | RefSeq:XP_006359031.1 | SEG:seg |
Description
Signal peptidase complex subunit 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400025078]
Coordinates
chr4:+:61365638..61370163
Molecular Weight (calculated)
21506.2 Da
IEP (calculated)
9.680
GRAVY (calculated)
-0.046
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSTTQTPVK KNPKKANLLD HHSIKSLLDE SVTEIVTSKG YPEDVRLSNI RLLIGSIIIA IALVAQFYKK EFPANRDFLI GCIVLYILFN VILQLIIHTK
101: EKNAILFTYP PEGSFNSTGL VVSSKLPRFS DMYTLTVESA DPKSISARPK VEFTKSVTKW FAKDGVLVEG LFWKDVEALV NDYAKEHKKS K
101: EKNAILFTYP PEGSFNSTGL VVSSKLPRFS DMYTLTVESA DPKSISARPK VEFTKSVTKW FAKDGVLVEG LFWKDVEALV NDYAKEHKKS K
001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
Arabidopsis Description
Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.