Factsheet for Zm00001d038380_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004622_P001
Zm00001d008269_P001
Zm00001d009201_P001
Zm00001d016170_P001	peroxisome
Zm00001d037747_P001
Zm00001d039455_P002
Zm00001d040408_P003
Zm00001d045580_P001
Zm00001d050984_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	Zm00001d016170_P001	AT1G29260.1	23297417
AT3G46060.1	Zm00001d004622_P001	AT3G06540.1	21798944
AT3G46060.1	Zm00001d008269_P001	AT3G06540.1	21798944
AT3G46060.1	Zm00001d009201_P001	AT3G06540.1	21798944
AT3G46060.1	Zm00001d040408_P003	AT3G06540.1	21798944
AT3G46060.1	Zm00001d050984_P001	AT3G06540.1	21798944
AT3G46060.1	Zm00001d037747_P001	AT3G13720.1	21798944
AT3G46060.1	Zm00001d039455_P002	AT3G13720.1	21798944
AT3G46060.1	Zm00001d045580_P001	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010538_P005	Maize	cytosol	100.0	100.0
EES19652	Sorghum	cytosol	100.0	100.0
CDY72056	Canola	cytosol	56.28	96.8
Os05t0461300-01	Rice	plastid	96.74	96.3
GSMUA_Achr11P...	Banana	cytosol	96.28	95.83
TraesCS1A01G286200.1	Wheat	cytosol	95.35	95.79
TraesCS1D01G285200.1	Wheat	cytosol	95.35	95.79
TraesCS1B01G295600.1	Wheat	cytosol	95.35	95.79
GSMUA_Achr9P03220_001	Banana	cytosol	95.81	95.37
GSMUA_Achr10P...	Banana	cytosol	95.81	95.37
Solyc06g005350.2.1	Tomato	cytosol	63.72	95.14
Zm00001d034638_P001	Maize	cytosol	93.95	93.95
GSMUA_AchrUn_...	Banana	cytosol	93.95	93.52
GSMUA_Achr6P34270_001	Banana	cytosol	93.95	93.52
PGSC0003DMT400040138	Potato	cytosol	93.49	93.06
VIT_06s0004g04200.t01	Wine grape	cytosol	93.02	92.59
GSMUA_Achr8P02620_001	Banana	cytosol	93.02	92.59
KRH29838	Soybean	endoplasmic reticulum	92.09	92.52
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	92.56	92.13
KRH70501	Soybean	endoplasmic reticulum	92.56	92.13
KRH01606	Soybean	endoplasmic reticulum	92.56	92.13
VIT_13s0019g00520.t01	Wine grape	extracellular	92.56	92.13
KRH24835	Soybean	cytosol	91.63	92.06
PGSC0003DMT400022823	Potato	cytosol	92.09	91.67
Solyc09g010370.2.1	Tomato	extracellular, plastid	92.09	91.67
GSMUA_Achr10P...	Banana	cytosol	92.09	91.67
PGSC0003DMT400049296	Potato	cytosol	91.63	91.2
VIT_08s0040g02490.t01	Wine grape	cytosol	91.63	91.2
CDY30926	Canola	cytosol	91.63	91.2
Bra019475.1-P	Field mustard	cytosol	91.16	90.74
CDY71506	Canola	cytosol	91.16	90.74
KRH36193	Soybean	endoplasmic reticulum, extracellular	91.16	90.74
CDX86045	Canola	cytosol	91.16	90.74
CDX68365	Canola	cytosol	91.16	90.74
KRH10292	Soybean	cytosol	90.7	90.7
AT3G46060.1	Thale cress	cytosol	90.7	90.28
KRG90563	Soybean	cytosol	90.7	90.28
CDX77855	Canola	cytosol	90.7	90.28
AT5G59840.1	Thale cress	cytosol	90.7	90.28
KRH23030	Soybean	endoplasmic reticulum	90.23	90.23
PGSC0003DMT400071317	Potato	cytosol	90.23	89.81
CDY31592	Canola	cytosol	90.23	89.81
Solyc04g011360.2.1	Tomato	plastid	90.23	89.81
PGSC0003DMT400008917	Potato	cytosol	90.23	89.81
Solyc10g086350.1.1	Tomato	cytosol, nucleus	89.77	89.35
AT3G53610.3	Thale cress	cytosol	89.77	89.35
Bra002527.1-P	Field mustard	cytosol	89.77	89.35
Bra006690.1-P	Field mustard	cytosol	88.84	88.43
Bra033830.1-P	Field mustard	cytosol	79.07	88.08
CDX88726	Canola	cytosol	88.37	87.96
CDX88725	Canola	cytosol	88.37	87.96
CDX80224	Canola	cytosol	86.51	87.32
CDY09249	Canola	cytosol	86.98	86.57
Bra020282.1-P	Field mustard	cytosol	86.98	86.57
HORVU1Hr1G072070.1	Barley	cytosol	87.91	84.0
CDY34032	Canola	cytosol	53.02	77.55
CDY70243	Canola	cytosol	52.56	74.34
CDY07577	Canola	cytosol	89.77	72.28
CDY52746	Canola	cytosol	89.3	71.38
Bra003149.1-P	Field mustard	cytosol	89.3	71.38
CDX94925	Canola	cytosol	53.49	70.12
CDX99131	Canola	cytosol	91.63	63.96
Zm00001d011162_P002	Maize	plasma membrane	55.35	58.62
Zm00001d003588_P002	Maize	cytosol, extracellular	40.47	58.39
Zm00001d035741_P002	Maize	cytosol	53.95	56.59
Bra038265.1-P	Field mustard	cytosol	91.16	52.13
Zm00001d005215_P001	Maize	cytosol	32.56	46.05
Zm00001d051336_P001	Maize	plastid	56.28	44.49
Zm00001d025660_P001	Maize	plasma membrane, plastid	41.4	42.38
Zm00001d003789_P002	Maize	extracellular, plasma membrane	47.44	38.64
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	40.47	38.5
Zm00001d003347_P003	Maize	cytosol	32.09	36.9
Zm00001d050915_P004	Maize	cytosol	39.53	34.27
Zm00001d017456_P003	Maize	cytosol	56.74	30.42

Protein Annotations

EntrezGene:100192989	EntrezGene:103635765	MapMan:22.8.1.5	Gene3D:3.40.50.300	ProteinID:AQK86487.1	ProteinID:AQK86489.1
ProteinID:AQK94279.1	ProteinID:AQK94285.1	ProteinID:AQK94287.1	UniProt:B4FB55	EMBL:BT034343	EMBL:BT035127
EMBL:BT039572	EMBL:BT040995	EMBL:EU963986	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00017B6761	EnsemblPlantsGene:Zm00001d038380	EnsemblPlants:Zm00001d038380_P001	EnsemblPlants:Zm00001d038380_T001	SEG:seg

Description

Ras-related protein RABE1c

Coordinates

chr6:-:155926731..155930492

Molecular Weight (calculated)

23883.4 Da

IEP (calculated)

8.443

GRAVY (calculated)

-0.348

Length

215 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LAETDSKPED KAIKINKPDQ
201: GSEAPAAQRS ACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.