Factsheet for Zm00001d011162_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
plasma membrane: 23353019
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03124	Sorghum	cytosol	99.51	99.51
Os01t0558600-01	Rice	plasma membrane	97.04	97.52
HORVU3Hr1G048090.1	Barley	plasma membrane	95.07	95.07
TraesCS3A01G203100.1	Wheat	plastid	95.07	95.07
TraesCS3B01G230700.1	Wheat	cytosol	93.1	85.52
TraesCS3D01G206600.1	Wheat	cytosol	93.1	85.52
Zm00001d003588_P002	Maize	cytosol, extracellular	57.64	78.52
Zm00001d035741_P002	Maize	cytosol	73.4	72.68
Zm00001d005215_P001	Maize	cytosol	47.29	63.16
Zm00001d051336_P001	Maize	plastid	82.76	61.76
Zm00001d034638_P001	Maize	cytosol	59.11	55.81
Zm00001d010538_P005	Maize	cytosol	58.62	55.35
Zm00001d038380_P001	Maize	extracellular, plasma membrane	58.62	55.35
Zm00001d003789_P002	Maize	extracellular, plasma membrane	68.97	53.03
Zm00001d025660_P001	Maize	plasma membrane, plastid	48.77	47.14
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	47.78	42.92
Zm00001d017456_P003	Maize	cytosol	83.25	42.14
Zm00001d050915_P004	Maize	cytosol	47.29	38.71
Zm00001d003347_P003	Maize	cytosol	33.99	36.9

Protein Annotations

EntrezGene:100191848	MapMan:22.8.1.4	Gene3D:3.40.50.300	ProteinID:AQK96057.1	UniProt:B4FAE1	EMBL:BT034079
EMBL:BT060781	EMBL:EU952511	EMBL:EU953148	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF845	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00017B62D2	EnsemblPlantsGene:Zm00001d011162	EnsemblPlants:Zm00001d011162_P002	EnsemblPlants:Zm00001d011162_T002	:

Description

ras-related protein RIC1Ras-related protein RABD2c

Coordinates

chr8:-:141382367..141385399

Molecular Weight (calculated)

22507.6 Da

IEP (calculated)

4.890

GRAVY (calculated)

-0.301

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLAENRV VSYEAGKALA DDIGIPFLET SAKDATNVEK AFMTMAGEIK NRMASQPAAS GASRPATVQM RGQPVSQQSS
201: CCS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.