Factsheet for Zm00001d035741_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d037747_P001
Zm00001d039213_P001
Zm00001d039455_P002
Zm00001d042846_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	Zm00001d037747_P001	AT3G13710.1	21798944
AT3G11730.1	Zm00001d039455_P002	AT3G13710.1	21798944
AT3G11730.1	Zm00001d039213_P001	AT3G54120.1	21798944
AT3G11730.1	Zm00001d042846_P001	AT3G54120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18842	Sorghum	cytosol	96.59	96.59
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	87.32	87.32
TraesCS1B01G019100.2	Wheat	golgi	86.83	86.83
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	86.34	86.76
GSMUA_Achr10P...	Banana	cytosol	81.46	82.67
VIT_12s0035g01150.t01	Wine grape	vacuole	80.0	81.19
KRH06045	Soybean	cytosol	79.02	80.6
KRH26285	Soybean	endoplasmic reticulum	79.02	80.6
Zm00001d003588_P002	Maize	cytosol, extracellular	58.54	80.54
PGSC0003DMT400064019	Potato	cytosol, extracellular	78.05	79.21
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	77.56	78.71
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	85.37	77.78
CDY47919	Canola	vacuole	78.05	77.67
Bra038676.1-P	Field mustard	vacuole	78.05	77.67
CDY56593	Canola	cytosol	75.12	74.76
CDX73855	Canola	cytosol	75.12	74.76
AT3G11730.1	Thale cress	cytosol	74.63	74.63
Bra001418.1-P	Field mustard	cytosol, extracellular	74.63	74.27
Zm00001d011162_P002	Maize	plasma membrane	72.68	73.4
GSMUA_Achr6P17450_001	Banana	cytosol	82.44	67.06
Zm00001d005215_P001	Maize	cytosol	49.27	66.45
Zm00001d051336_P001	Maize	plastid	74.63	56.25
Zm00001d003789_P002	Maize	extracellular, plasma membrane	71.71	55.68
Zm00001d010538_P005	Maize	cytosol	56.59	53.95
Zm00001d038380_P001	Maize	extracellular, plasma membrane	56.59	53.95
Zm00001d034638_P001	Maize	cytosol	55.12	52.56
Zm00001d025660_P001	Maize	plasma membrane, plastid	44.88	43.81
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	43.9	39.82
Zm00001d017456_P003	Maize	cytosol	73.66	37.66
Zm00001d003347_P003	Maize	cytosol	34.15	37.43
Zm00001d050915_P004	Maize	cytosol	44.39	36.69

Protein Annotations

EntrezGene:103629287	MapMan:22.8.1.4	Gene3D:3.40.50.300	UniProt:A0A0B4J3B1	ProteinID:AQK79562.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF827
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00019AA937	EnsemblPlantsGene:Zm00001d035741	EnsemblPlants:Zm00001d035741_P002
EnsemblPlants:Zm00001d035741_T002	:	:	:	:	:

Description

Ras-related protein RABD1

Coordinates

chr6:+:44431908..44435502

Molecular Weight (calculated)

23139.6 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.220

Length

205 amino acids

Sequence
(BLAST)

001: MTTSIEYDYL FKLLLIGDSS VGKSCLLLRF ADDSYVDTYI STIGVDFKIR TIDLDGKTVK LQIWDTAGQE RFRTITSSYY RGAHGIIIVY DVTDMESFNN
101: IKQWLSEIDR YASDNVCKLL VGNKCDLVDS KVVDTEKAKD FADSLGIPFI ETSAKESINV EEAFLTMSSE IKKRMATQPT VERRPTVHVH MKGQPIQQKS
201: SCCSS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.