CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
golgi 3
endoplasmic reticulum 3
mitochondrion 1
extracellular 2
plasma membrane 2
vacuole 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98294
KRH10001
KRH14895
KRH23330
KRH30354
KRH44167
KRH47141
KRH54835
KRH66004
KRH73238
KRH75801

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	KRH14895	AT2G40380.1	21798944
AT3G11730.1	KRH54835	AT2G40380.1	21798944
AT3G11730.1	KRH73238	AT2G40380.1	21798944
AT3G11730.1	KRH10001	AT3G13710.1	21798944
AT3G11730.1	KRH23330	AT3G13710.1	21798944
AT3G11730.1	KRH44167	AT3G13710.1	21798944
AT3G11730.1	KRH47141	AT3G13710.1	21798944
AT3G11730.1	KRH66004	AT3G54120.1	21798944
AT3G11730.1	KRH75801	AT3G54120.1	21798944
AT3G11730.1	KRG98294	AT5G58750.1	21798944
AT3G11730.1	KRH30354	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26285	Soybean	endoplasmic reticulum	98.01	98.01
VIT_12s0035g01150.t01	Wine grape	vacuole	91.04	90.59
PGSC0003DMT400064019	Potato	cytosol, extracellular	88.06	87.62
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	87.56	87.13
GSMUA_Achr10P...	Banana	cytosol	84.58	84.16
Zm00001d003588_P002	Maize	cytosol, extracellular	61.69	83.22
CDX73855	Canola	cytosol	84.58	82.52
CDY56593	Canola	cytosol	84.58	82.52
AT3G11730.1	Thale cress	cytosol	84.08	82.44
Bra001418.1-P	Field mustard	cytosol, extracellular	84.08	82.04
Bra038676.1-P	Field mustard	vacuole	84.08	82.04
CDY47919	Canola	vacuole	84.08	82.04
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	81.59	80.0
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	81.09	79.9
TraesCS1B01G019100.2	Wheat	golgi	81.09	79.51
Zm00001d035741_P002	Maize	cytosol	80.6	79.02
EES18842	Sorghum	cytosol	80.1	78.54
KRH04201	Soybean	cytosol, extracellular	77.61	77.23
KRH57496	Soybean	endoplasmic reticulum	77.11	76.73
KRH01059	Soybean	endoplasmic reticulum	76.62	76.24
EES10859	Sorghum	cytosol	78.11	75.85
KRH40178	Soybean	endoplasmic reticulum	76.12	75.74
KRH66494	Soybean	endoplasmic reticulum	75.62	74.88
TraesCS2B01G327900.1	Wheat	cytosol	76.62	74.76
TraesCS2A01G311000.3	Wheat	cytosol	76.62	72.3
TraesCS2D01G309200.2	Wheat	cytosol	76.12	71.83
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	80.1	71.56
Zm00001d005215_P001	Maize	cytosol	51.74	68.42
GSMUA_Achr6P17450_001	Banana	cytosol	85.07	67.86
KRH48822	Soybean	cytosol, endoplasmic reticulum	52.74	67.09
Zm00001d003789_P002	Maize	extracellular, plasma membrane	75.12	57.2
KRH29838	Soybean	endoplasmic reticulum	57.71	54.21
KRH24835	Soybean	cytosol	57.21	53.74
KRH36193	Soybean	endoplasmic reticulum, extracellular	57.71	53.7
KRH70501	Soybean	endoplasmic reticulum	57.21	53.24
KRG90563	Soybean	cytosol	57.21	53.24
KRH01606	Soybean	endoplasmic reticulum	57.21	53.24
KRH10292	Soybean	cytosol	56.72	53.02
KRH23030	Soybean	endoplasmic reticulum	56.72	53.02
KRH36659	Soybean	cytosol	44.28	42.18
KRH11646	Soybean	endoplasmic reticulum	44.28	42.18
KRG93957	Soybean	endoplasmic reticulum	42.29	40.28
KRH58242	Soybean	endoplasmic reticulum	42.29	40.28

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	UniProt:A0A0R0FJ21	EMBL:ACUP02009815	EnsemblPlantsGene:GLYMA_16G001700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EnsemblPlants:KRH06045	ProteinID:KRH06045	ProteinID:KRH06045.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00019AA8FD	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:96745..99016

Molecular Weight (calculated)

22387.7 Da

IEP (calculated)

4.904

GRAVY (calculated)

-0.213

Length

201 amino acids

Sequence
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DSYVDSYIST IGVDFKIRTV ELEGKTVKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TEMESFNNVK
101: QWLNEIDRYA NDSVCKLLVG NKSDLVDNKV VDSLTAKAFA DELGIPFLET SAKDSINVEQ AFLTMTAEIK KKMGSQTTAG KSAETVQMKG QPIPQKSNCC
201: G

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.