Factsheet for Bra038676.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002620.1-P
Bra003171.1-P
Bra004965.1-P
Bra005924.1-P
Bra007047.1-P
Bra021504.1-P
Bra027406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	Bra004965.1-P	AT2G40380.1	21798944
AT3G11730.1	Bra021504.1-P	AT3G13710.1	21798944
AT3G11730.1	Bra027406.1-P	AT3G13710.1	21798944
AT3G11730.1	Bra003171.1-P	AT3G54120.1	21798944
AT3G11730.1	Bra007047.1-P	AT3G54120.1	21798944
AT3G11730.1	Bra005924.1-P	AT5G07110.1	21798944
AT3G11730.1	Bra002620.1-P	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47919	Canola	vacuole	100.0	100.0
Bra001418.1-P	Field mustard	cytosol, extracellular	94.17	94.17
AT3G11730.1	Thale cress	cytosol	93.69	94.15
VIT_12s0035g01150.t01	Wine grape	vacuole	85.44	87.13
KRH06045	Soybean	cytosol	82.04	84.08
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	82.04	83.66
PGSC0003DMT400064019	Potato	cytosol, extracellular	82.04	83.66
KRH26285	Soybean	endoplasmic reticulum	81.07	83.08
GSMUA_Achr10P...	Banana	cytosol	79.61	81.19
TraesCS1B01G019100.2	Wheat	golgi	78.16	78.54
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	78.16	78.54
Zm00001d003588_P002	Maize	cytosol, extracellular	56.8	78.52
Zm00001d035741_P002	Maize	cytosol	77.67	78.05
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	77.18	77.94
EES18842	Sorghum	cytosol	76.7	77.07
Bra012658.1-P	Field mustard	cytosol	74.76	76.24
Bra017497.1-P	Field mustard	cytosol	73.3	74.75
Bra022113.1-P	Field mustard	cytosol	73.3	74.75
Bra024956.1-P	Field mustard	cytosol	73.3	74.75
EES10859	Sorghum	cytosol	74.27	73.91
TraesCS2B01G327900.1	Wheat	cytosol	73.3	73.3
TraesCS2A01G311000.3	Wheat	cytosol	73.3	70.89
TraesCS2D01G309200.2	Wheat	cytosol	72.82	70.42
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	76.21	69.78
GSMUA_Achr6P17450_001	Banana	cytosol	79.61	65.08
Zm00001d005215_P001	Maize	cytosol	47.57	64.47
Bra019475.1-P	Field mustard	cytosol	58.25	55.56
Bra002527.1-P	Field mustard	cytosol	57.77	55.09
Bra006690.1-P	Field mustard	cytosol	57.77	55.09
Bra020282.1-P	Field mustard	cytosol	57.77	55.09
Bra040162.1-P	Field mustard	cytosol	72.82	54.74
Zm00001d003789_P002	Maize	extracellular, plasma membrane	69.42	54.17
Bra005767.1-P	Field mustard	cytosol	56.8	53.92
Bra033830.1-P	Field mustard	cytosol	50.49	53.89
Bra029803.1-P	Field mustard	cytosol	57.28	52.21
Bra021065.1-P	Field mustard	cytosol	46.12	45.24
Bra011645.1-P	Field mustard	cytosol	46.12	45.02
Bra026231.1-P	Field mustard	cytosol	46.12	45.02
Bra017733.1-P	Field mustard	cytosol	45.15	44.08
Bra003149.1-P	Field mustard	cytosol	56.8	43.49
Bra038265.1-P	Field mustard	cytosol	57.77	31.65

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra038676	EnsemblPlants:Bra038676.1	EnsemblPlants:Bra038676.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4FC60	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF845	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00019AA8BC	:

Description

AT3G11730 (E=7e-109) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding

Coordinates

chrA01:+:26653865..26655829

Molecular Weight (calculated)

22703.0 Da

IEP (calculated)

4.747

GRAVY (calculated)

-0.214

Length

206 amino acids

Sequence
(BLAST)

001: MSTEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI ELDGKTVKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NDSVCKLLIG NKNDMVESKV VSTETGKALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KRMGSQPNAN NTSGSGTVQM KGQPILQNNG
201: GCCSSS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.