Factsheet for Bra019475.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra010452.1-P
Bra010844.1-P	peroxisome
Bra013908.1-P
Bra013910.1-P
Bra020182.1-P
Bra021502.1-P
Bra021503.1-P
Bra029586.1-P
Bra032295.1-P	peroxisome

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	Bra010844.1-P	AT1G29260.1	23297417
AT3G46060.1	Bra032295.1-P	AT1G29260.1	23297417
AT3G46060.1	Bra029586.1-P	AT3G06540.1	21798944
AT3G46060.1	Bra021502.1-P	AT3G13720.1	21798944
AT3G46060.1	Bra021503.1-P	AT3G13720.1	21798944
AT3G46060.1	Bra010452.1-P	AT4G25660.1	21798944
AT3G46060.1	Bra013908.1-P	AT4G25660.1	21798944
AT3G46060.1	Bra013910.1-P	AT4G25660.1	21798944
AT3G46060.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G46060.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G46060.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30926	Canola	cytosol	99.07	99.07
AT3G46060.1	Thale cress	cytosol	98.15	98.15
Bra033830.1-P	Field mustard	cytosol	86.11	96.37
KRH29838	Soybean	endoplasmic reticulum	94.44	95.33
Solyc06g005350.2.1	Tomato	cytosol	63.43	95.14
Bra002527.1-P	Field mustard	cytosol	94.91	94.91
Bra006690.1-P	Field mustard	cytosol	94.91	94.91
KRH24835	Soybean	cytosol	93.98	94.86
PGSC0003DMT400040138	Potato	cytosol	94.44	94.44
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	93.98	93.98
VIT_06s0004g04200.t01	Wine grape	cytosol	93.52	93.52
KRH10292	Soybean	cytosol	92.59	93.02
KRH23030	Soybean	endoplasmic reticulum	92.13	92.56
PGSC0003DMT400008917	Potato	cytosol	92.13	92.13
Os03t0819900-01	Rice	plasma membrane	91.2	92.06
GSMUA_Achr9P03220_001	Banana	cytosol	91.67	91.67
GSMUA_Achr6P34270_001	Banana	cytosol	91.67	91.67
GSMUA_Achr11P...	Banana	cytosol	91.67	91.67
Os05t0461300-01	Rice	plastid	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol	91.67	91.67
Zm00001d034638_P001	Maize	cytosol	91.2	91.63
EER93195	Sorghum	cytosol	90.74	91.59
Bra020282.1-P	Field mustard	cytosol	91.2	91.2
EES19652	Sorghum	cytosol	90.74	91.16
Os07t0239400-01	Rice	plasma membrane	90.74	91.16
Zm00001d038380_P001	Maize	extracellular, plasma membrane	90.74	91.16
Zm00001d010538_P005	Maize	cytosol	90.74	91.16
TraesCS3B01G388900.1	Wheat	cytosol	90.28	90.28
TraesCS3A01G356000.3	Wheat	plastid	90.28	90.28
TraesCS1B01G295600.1	Wheat	cytosol	89.35	90.19
TraesCS1D01G285200.1	Wheat	cytosol	89.35	90.19
TraesCS1A01G286200.1	Wheat	cytosol	89.35	90.19
GSMUA_AchrUn_...	Banana	cytosol	89.81	89.81
GSMUA_Achr8P02620_001	Banana	cytosol	88.89	88.89
TraesCS5B01G489300.1	Wheat	golgi	87.96	88.78
GSMUA_Achr10P...	Banana	cytosol	88.43	88.43
TraesCS5A01G476400.1	Wheat	cytosol	87.5	88.32
TraesCS5D01G489700.1	Wheat	cytosol	87.04	87.85
OQU88745	Sorghum	cytosol	89.81	85.84
Bra005767.1-P	Field mustard	cytosol	84.72	84.33
HORVU1Hr1G072070.1	Barley	cytosol	86.57	83.11
TraesCS3D01G350000.3	Wheat	cytosol	90.28	81.93
Bra029803.1-P	Field mustard	cytosol	82.41	78.76
Bra003149.1-P	Field mustard	cytosol	93.06	74.72
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	81.48	67.95
HORVU3Hr1G086830.7	Barley	cytosol	77.78	63.4
Bra024956.1-P	Field mustard	cytosol	57.87	61.88
Bra012658.1-P	Field mustard	cytosol	57.87	61.88
Bra022113.1-P	Field mustard	cytosol	57.41	61.39
Bra017497.1-P	Field mustard	cytosol	57.41	61.39
Bra038676.1-P	Field mustard	vacuole	55.56	58.25
Bra001418.1-P	Field mustard	cytosol, extracellular	55.09	57.77
Bra038265.1-P	Field mustard	cytosol	97.69	56.12
Bra040162.1-P	Field mustard	cytosol	56.94	44.89
Bra021065.1-P	Field mustard	cytosol	42.13	43.33
Bra026231.1-P	Field mustard	cytosol	42.13	43.13
Bra011645.1-P	Field mustard	cytosol	42.13	43.13
Bra017733.1-P	Field mustard	cytosol	41.2	42.18

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra019475	EnsemblPlants:Bra019475.1	EnsemblPlants:Bra019475.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4DSI2	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF826	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253F0F8	SEG:seg

Description

AT3G46060 (E=1e-088) ARA3 | ATRAB8A; GTP binding

Coordinates

chrA06:-:13162913..13164116

Molecular Weight (calculated)

23722.2 Da

IEP (calculated)

8.444

GRAVY (calculated)

-0.280

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSKAEP ATIKISQTGQ
201: AAGAGQASQK SACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.