Factsheet for Os05t0461300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 21433289
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0196500-01
Os01t0269100-01
Os02t0245100-01	peroxisome
Os05t0200280-01
Os06t0107000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	Os02t0245100-01	AT1G29260.1	23297417
AT3G46060.1	Os01t0269100-01	AT3G06540.1	21798944
AT3G46060.1	Os01t0196500-01	AT3G13720.1	21798944
AT3G46060.1	Os05t0200280-01	AT3G13720.1	21798944
AT3G46060.1	Os06t0107000-01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G286200.1	Wheat	cytosol	96.3	97.2
TraesCS1B01G295600.1	Wheat	cytosol	96.3	97.2
TraesCS1D01G285200.1	Wheat	cytosol	96.3	97.2
CDY72056	Canola	cytosol	56.02	96.8
EES19652	Sorghum	cytosol	96.3	96.74
Zm00001d038380_P001	Maize	extracellular, plasma membrane	96.3	96.74
Zm00001d010538_P005	Maize	cytosol	96.3	96.74
GSMUA_Achr10P...	Banana	cytosol	95.83	95.83
GSMUA_Achr9P03220_001	Banana	cytosol	95.37	95.37
GSMUA_Achr11P...	Banana	cytosol	95.37	95.37
Solyc06g005350.2.1	Tomato	cytosol	63.43	95.14
GSMUA_AchrUn_...	Banana	cytosol	93.98	93.98
GSMUA_Achr6P34270_001	Banana	cytosol	93.98	93.98
Os03t0819900-01	Rice	plasma membrane	93.06	93.93
Os07t0239400-01	Rice	plasma membrane	93.06	93.49
PGSC0003DMT400040138	Potato	cytosol	93.06	93.06
GSMUA_Achr8P02620_001	Banana	cytosol	92.59	92.59
KRH29838	Soybean	endoplasmic reticulum	91.67	92.52
KRH01606	Soybean	endoplasmic reticulum	92.13	92.13
KRH70501	Soybean	endoplasmic reticulum	92.13	92.13
CDY30926	Canola	cytosol	92.13	92.13
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	92.13	92.13
VIT_13s0019g00520.t01	Wine grape	extracellular	92.13	92.13
KRH24835	Soybean	cytosol	91.2	92.06
Solyc09g010370.2.1	Tomato	extracellular, plastid	91.67	91.67
Bra019475.1-P	Field mustard	cytosol	91.67	91.67
PGSC0003DMT400022823	Potato	cytosol	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol	91.2	91.2
AT3G46060.1	Thale cress	cytosol	91.2	91.2
CDX86045	Canola	cytosol	91.2	91.2
VIT_08s0040g02490.t01	Wine grape	cytosol	91.2	91.2
AT5G59840.1	Thale cress	cytosol	91.2	91.2
CDY71506	Canola	cytosol	90.74	90.74
PGSC0003DMT400049296	Potato	cytosol	90.74	90.74
CDY31592	Canola	cytosol	90.74	90.74
CDX77855	Canola	cytosol	90.74	90.74
CDX68365	Canola	cytosol	90.74	90.74
VIT_06s0004g04200.t01	Wine grape	cytosol	90.74	90.74
KRH36193	Soybean	endoplasmic reticulum, extracellular	90.74	90.74
KRH10292	Soybean	cytosol	90.28	90.7
KRH23030	Soybean	endoplasmic reticulum	90.28	90.7
Bra002527.1-P	Field mustard	cytosol	90.28	90.28
PGSC0003DMT400071317	Potato	cytosol	89.81	89.81
PGSC0003DMT400008917	Potato	cytosol	89.81	89.81
AT3G53610.3	Thale cress	cytosol	89.81	89.81
KRG90563	Soybean	cytosol	89.81	89.81
Bra006690.1-P	Field mustard	cytosol	89.35	89.35
Solyc10g086350.1.1	Tomato	cytosol, nucleus	89.35	89.35
Solyc04g011360.2.1	Tomato	plastid	89.35	89.35
CDX88725	Canola	cytosol	88.89	88.89
CDX88726	Canola	cytosol	88.89	88.89
CDX80224	Canola	cytosol	87.04	88.26
Bra033830.1-P	Field mustard	cytosol	78.7	88.08
Bra020282.1-P	Field mustard	cytosol	86.57	86.57
CDY09249	Canola	cytosol	86.11	86.11
HORVU1Hr1G072070.1	Barley	cytosol	86.57	83.11
CDY34032	Canola	cytosol	52.78	77.55
CDY70243	Canola	cytosol	52.31	74.34
CDY07577	Canola	cytosol	89.81	72.66
Bra003149.1-P	Field mustard	cytosol	89.35	71.75
CDY52746	Canola	cytosol	89.35	71.75
CDX94925	Canola	cytosol	53.24	70.12
CDX99131	Canola	cytosol	91.67	64.29
Os01t0179700-01	Rice	plasma membrane	57.41	61.08
Os02t0653800-01	Rice	plasma membrane	57.41	61.08
Os01t0558600-01	Rice	plasma membrane	56.02	59.9
Os07t0195100-01	Rice	plasma membrane	73.15	57.88
Bra038265.1-P	Field mustard	cytosol	91.2	52.39
Os02t0586400-01	Rice	plasma membrane	41.67	42.86
Os04t0470100-01	Rice	plasma membrane	40.28	41.23
Os10t0208200-00	Rice	cytosol	37.04	37.74

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EntrezGene:4339021	ProteinID:AAT39172.1	EMBL:AK111917	EMBL:AK111972
EMBL:AK112021	ProteinID:BAF17675.1	ProteinID:BAS94412.1	ProteinID:EEE63991.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009306	GO:GO:0009987	GO:GO:0016787	GO:GO:0017157	EnsemblPlantsGene:Os05g0461300
EnsemblPlants:Os05t0461300-01	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF642	UniProt:Q6L502	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000037805B
RefSeq:XP_015640739.1	SEG:seg	:	:	:	:

Description

small GTP-binding protein OsRab8A2Similar to RAB8C. (Os05t0461300-01);Similar to RAB8C. (Os05t0461300-02)

Coordinates

chr5:-:22649306..22652508

Molecular Weight (calculated)

23918.4 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.353

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LAETDSKPED KTIKINNKTD
201: QGADKPAASG SACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.