Factsheet for PGSC0003DMT400022823

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010370.2.1	Tomato	extracellular, plastid	100.0	100.0
PGSC0003DMT400049296	Potato	cytosol	95.37	95.37
PGSC0003DMT400071317	Potato	cytosol	93.98	93.98
VIT_08s0040g02490.t01	Wine grape	cytosol	93.98	93.98
PGSC0003DMT400040138	Potato	cytosol	93.52	93.52
AT3G53610.3	Thale cress	cytosol	92.59	92.59
Zm00001d038380_P001	Maize	extracellular, plasma membrane	91.67	92.09
EES19652	Sorghum	cytosol	91.67	92.09
Zm00001d010538_P005	Maize	cytosol	91.67	92.09
Os07t0239400-01	Rice	plasma membrane	91.67	92.09
Os05t0461300-01	Rice	plastid	91.67	91.67
PGSC0003DMT400008917	Potato	cytosol	91.67	91.67
GSMUA_Achr9P03220_001	Banana	cytosol	91.2	91.2
GSMUA_Achr6P34270_001	Banana	cytosol	91.2	91.2
GSMUA_Achr11P...	Banana	cytosol	91.2	91.2
GSMUA_Achr10P...	Banana	cytosol	91.2	91.2
Os03t0819900-01	Rice	plasma membrane	90.28	91.12
GSMUA_AchrUn_...	Banana	cytosol	90.74	90.74
TraesCS1B01G295600.1	Wheat	cytosol	89.81	90.65
TraesCS1A01G286200.1	Wheat	cytosol	89.81	90.65
TraesCS1D01G285200.1	Wheat	cytosol	89.81	90.65
EER93195	Sorghum	cytosol	89.81	90.65
GSMUA_Achr10P...	Banana	cytosol	90.28	90.28
Zm00001d034638_P001	Maize	cytosol	89.81	90.23
TraesCS5B01G489300.1	Wheat	golgi	88.89	89.72
GSMUA_Achr8P02620_001	Banana	cytosol	89.35	89.35
TraesCS3A01G356000.3	Wheat	plastid	89.35	89.35
TraesCS5A01G476400.1	Wheat	cytosol	88.43	89.25
TraesCS3B01G388900.1	Wheat	cytosol	88.89	88.89
TraesCS5D01G489700.1	Wheat	cytosol	87.96	88.78
OQU88745	Sorghum	cytosol	91.67	87.61
HORVU1Hr1G072070.1	Barley	cytosol	86.11	82.67
TraesCS3D01G350000.3	Wheat	cytosol	88.89	80.67
CDY07577	Canola	cytosol	92.59	74.91
Bra003149.1-P	Field mustard	cytosol	92.13	73.98
CDY52746	Canola	cytosol	92.13	73.98
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	82.41	68.73
HORVU3Hr1G086830.7	Barley	cytosol	76.39	62.26
PGSC0003DMT400067463	Potato	cytosol	57.41	61.08
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.94	60.59
PGSC0003DMT400041326	Potato	cytosol	55.56	59.11
PGSC0003DMT400064019	Potato	cytosol, extracellular	53.24	56.93
PGSC0003DMT400020113	Potato	cytosol	42.13	43.13
PGSC0003DMT400079822	Potato	cytosol	41.67	42.65
PGSC0003DMT400032908	Potato	cytosol	41.67	42.65
PGSC0003DMT400054721	Potato	cytosol	30.09	39.39

Protein Annotations

EntrezGene:102587980	MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1AHA4	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400008853	PGSC:PGSC0003DMG400008853	EnsemblPlants:PGSC0003DMT400022823	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000276AD06
RefSeq:XP_006341064.1	SEG:seg	:	:	:	:

Description

Small GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008853]

Coordinates

chr9:+:2153784..2158868

Molecular Weight (calculated)

23952.4 Da

IEP (calculated)

8.022

GRAVY (calculated)

-0.361

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD SKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNMNVEEVF FSIARDIKQR LAESDSKAEP QTIRINQPDQ
201: GAGSSQGAQK SACCGS

Best Arabidopsis Sequence Match ( AT3G53610.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDS VNKILVGNKA DMDESKRAVP KSKGQALADE YGMKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDARAEP QTIKINQSDQ
201: GAGTSQATQK SACCGT

Arabidopsis Description

RABE1ARas-related protein RABE1a [Source:UniProtKB/Swiss-Prot;Acc:O24466]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.