Factsheet for GSMUA_Achr6P34270_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	peroxisome
GSMUA_Achr6P03390_001
GSMUA_Achr6P14510_001	peroxisome
GSMUA_Achr7P09070_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	GSMUA_Achr10P...	AT1G29260.1	23297417
AT3G46060.1	GSMUA_Achr6P14510_001	AT1G29260.1	23297417
AT3G46060.1	GSMUA_Achr6P03390_001	AT3G06540.1	21798944
AT3G46060.1	GSMUA_Achr7P09070_001	AT3G13720.1	21798944
AT3G46060.1	GSMUA_AchrUn_...	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	97.22	97.22
GSMUA_Achr9P03220_001	Banana	cytosol	96.76	96.76
GSMUA_Achr11P...	Banana	cytosol	95.83	95.83
CDY72056	Canola	cytosol	55.09	95.2
GSMUA_AchrUn_...	Banana	cytosol	94.91	94.91
GSMUA_Achr8P02620_001	Banana	cytosol	94.44	94.44
Os05t0461300-01	Rice	plastid	93.98	93.98
Zm00001d038380_P001	Maize	extracellular, plasma membrane	93.52	93.95
Zm00001d010538_P005	Maize	cytosol	93.52	93.95
Os07t0239400-01	Rice	plasma membrane	93.52	93.95
EES19652	Sorghum	cytosol	93.52	93.95
Solyc06g005350.2.1	Tomato	cytosol	62.5	93.75
GSMUA_Achr10P...	Banana	cytosol	93.06	93.06
VIT_13s0019g00520.t01	Wine grape	extracellular	93.06	93.06
PGSC0003DMT400040138	Potato	cytosol	93.06	93.06
KRH70501	Soybean	endoplasmic reticulum	93.06	93.06
KRH24835	Soybean	cytosol	92.13	92.99
Os03t0819900-01	Rice	plasma membrane	92.13	92.99
KRH01606	Soybean	endoplasmic reticulum	92.59	92.59
TraesCS1B01G295600.1	Wheat	cytosol	91.67	92.52
TraesCS1D01G285200.1	Wheat	cytosol	91.67	92.52
TraesCS1A01G286200.1	Wheat	cytosol	91.67	92.52
EER93195	Sorghum	cytosol	91.67	92.52
KRH29838	Soybean	endoplasmic reticulum	91.67	92.52
VIT_08s0040g02490.t01	Wine grape	cytosol	92.13	92.13
CDY30926	Canola	cytosol	92.13	92.13
Zm00001d034638_P001	Maize	cytosol	91.67	92.09
VIT_06s0004g04200.t01	Wine grape	cytosol	91.67	91.67
Bra019475.1-P	Field mustard	cytosol	91.67	91.67
KRH36193	Soybean	endoplasmic reticulum, extracellular	91.67	91.67
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	91.67	91.67
TraesCS3B01G388900.1	Wheat	cytosol	91.67	91.67
Solyc09g010370.2.1	Tomato	extracellular, plastid	91.2	91.2
AT5G59840.1	Thale cress	cytosol	91.2	91.2
TraesCS3A01G356000.3	Wheat	plastid	91.2	91.2
PGSC0003DMT400022823	Potato	cytosol	91.2	91.2
AT3G46060.1	Thale cress	cytosol	91.2	91.2
CDX77855	Canola	cytosol	90.74	90.74
KRG90563	Soybean	cytosol	90.74	90.74
PGSC0003DMT400049296	Potato	cytosol	90.74	90.74
CDX68365	Canola	cytosol	90.74	90.74
CDY71506	Canola	cytosol	90.74	90.74
CDX86045	Canola	cytosol	90.74	90.74
CDY31592	Canola	cytosol	90.74	90.74
KRH10292	Soybean	cytosol	90.28	90.7
Bra002527.1-P	Field mustard	cytosol	90.28	90.28
KRH23030	Soybean	endoplasmic reticulum	89.81	90.23
PGSC0003DMT400071317	Potato	cytosol	89.81	89.81
PGSC0003DMT400008917	Potato	cytosol	89.81	89.81
Solyc04g011360.2.1	Tomato	plastid	89.35	89.35
AT3G53610.3	Thale cress	cytosol	89.35	89.35
Bra006690.1-P	Field mustard	cytosol	89.35	89.35
Solyc10g086350.1.1	Tomato	cytosol, nucleus	89.35	89.35
CDX88726	Canola	cytosol	88.89	88.89
CDX88725	Canola	cytosol	88.89	88.89
TraesCS5B01G489300.1	Wheat	golgi	87.96	88.78
TraesCS5A01G476400.1	Wheat	cytosol	87.5	88.32
CDX80224	Canola	cytosol	87.04	88.26
Bra033830.1-P	Field mustard	cytosol	78.7	88.08
TraesCS5D01G489700.1	Wheat	cytosol	87.04	87.85
OQU88745	Sorghum	cytosol	91.2	87.17
Bra020282.1-P	Field mustard	cytosol	86.11	86.11
CDY09249	Canola	cytosol	85.19	85.19
TraesCS3D01G350000.3	Wheat	cytosol	91.67	83.19
HORVU1Hr1G072070.1	Barley	cytosol	85.65	82.22
CDY34032	Canola	cytosol	52.31	76.87
CDY70243	Canola	cytosol	51.85	73.68
CDY07577	Canola	cytosol	90.28	73.03
Bra003149.1-P	Field mustard	cytosol	89.81	72.12
CDY52746	Canola	cytosol	89.81	72.12
CDX94925	Canola	cytosol	52.78	69.51
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	81.94	68.34
HORVU3Hr1G086830.7	Barley	cytosol	79.63	64.91
CDX99131	Canola	cytosol	91.2	63.96
GSMUA_Achr2P18340_001	Banana	plasma membrane	56.94	60.89
GSMUA_Achr8P15030_001	Banana	cytosol	56.94	60.59
GSMUA_Achr11P...	Banana	cytosol	56.48	60.1
GSMUA_Achr3P32240_001	Banana	cytosol	56.02	59.9
GSMUA_Achr7P24260_001	Banana	cytosol	56.02	59.9
GSMUA_Achr10P...	Banana	cytosol	51.39	54.95
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	55.09	52.42
Bra038265.1-P	Field mustard	cytosol	90.74	52.13
GSMUA_Achr6P17450_001	Banana	cytosol	52.78	45.24
GSMUA_Achr7P06570_001	Banana	cytosol	55.56	43.64
GSMUA_Achr9P27910_001	Banana	plasma membrane	41.2	42.18
GSMUA_Achr3P04210_001	Banana	cytosol	40.74	41.71
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	56.94	40.86
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	25.0	38.85
GSMUA_Achr4P09730_001	Banana	cytosol	37.04	37.91
GSMUA_Achr4P01720_001	Banana	endoplasmic reticulum, extracellular	38.43	33.2
GSMUA_Achr8P25750_001	Banana	cytosol	33.8	33.03

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G34270_001	EnsemblPlants:GSMUA_Achr6P34270_001	EnsemblPlants:GSMUA_Achr6T34270_001
UniProt:M0TCM0	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000295201C	SEG:seg

Description

Ras-related protein ARA-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34270_001]

Coordinates

chr6:+:32989818..32993116

Molecular Weight (calculated)

23878.4 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.249

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARV DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI CNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LAETDTKAED RTIKINKPDQ
201: AAAEGTAAAK SACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.