Factsheet for GSMUA_Achr4P09730_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P27910_001	Banana	plasma membrane	74.41	74.41
GSMUA_Achr3P04210_001	Banana	cytosol	73.46	73.46
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	45.02	68.35
GSMUA_Achr4P01720_001	Banana	endoplasmic reticulum, extracellular	69.19	58.4
GSMUA_Achr8P25750_001	Banana	cytosol	61.14	58.37
GSMUA_Achr7P24260_001	Banana	cytosol	41.71	43.56
GSMUA_Achr10P...	Banana	cytosol	40.76	42.57
GSMUA_Achr2P18340_001	Banana	plasma membrane	40.76	42.57
GSMUA_Achr3P32240_001	Banana	cytosol	40.76	42.57
GSMUA_Achr11P...	Banana	cytosol	40.76	42.36
GSMUA_Achr8P15030_001	Banana	cytosol	40.28	41.87
GSMUA_Achr10P...	Banana	cytosol	39.81	38.89
GSMUA_AchrUn_...	Banana	cytosol	38.86	37.96
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	40.76	37.89
GSMUA_Achr11P...	Banana	cytosol	38.39	37.5
GSMUA_Achr6P34270_001	Banana	cytosol	37.91	37.04
GSMUA_Achr9P03220_001	Banana	cytosol	37.91	37.04
GSMUA_Achr10P...	Banana	cytosol	37.91	37.04
GSMUA_Achr8P02620_001	Banana	cytosol	37.44	36.57
GSMUA_Achr6P17450_001	Banana	cytosol	40.76	34.13
GSMUA_Achr7P06570_001	Banana	cytosol	39.34	30.18
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	40.76	28.57

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr4G09730_001	EnsemblPlants:GSMUA_Achr4P09730_001	EnsemblPlants:GSMUA_Achr4T09730_001
UniProt:M0SMJ0	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002969AD0	SEG:seg	:

Description

GTP-binding protein YPTC4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G09730_001]

Coordinates

chr4:+:7049091..7051168

Molecular Weight (calculated)

23802.2 Da

IEP (calculated)

6.029

GRAVY (calculated)

-0.303

Length

211 amino acids

Sequence
(BLAST)

001: MSYDYLFKYI IIGDTCVGKS CILLQFTDKR FQAIHDLTIG VDYGAKMISI EDKLIKLCIW DTAGQETFRS ITRSYYRGAV AALLVYDITR RRTFDHLADW
101: LEDARRHANA DMTIVLIGNK SDLARKRAVS TEEGEQFAKD HGLMFMEASA RSGENVEEAF LSTAEIIYKR IRDGQYDVSN ESCGIKIGEG GTQHPCGERS
201: LSSSRYDSCC S

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.