Factsheet for GSMUA_Achr6P17450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr5P28860_001
GSMUA_Achr6P33560_001
GSMUA_Achr7P09070_001
GSMUA_Achr8P02250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944
AT3G11730.1	GSMUA_Achr10P...	AT3G54120.1	21798944
AT3G11730.1	GSMUA_Achr6P33560_001	AT3G54120.1	21798944
AT3G11730.1	GSMUA_Achr8P02250_001	AT3G54120.1	21798944
AT3G11730.1	GSMUA_Achr5P28860_001	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	73.81	92.08
VIT_12s0035g01150.t01	Wine grape	vacuole	68.65	85.64
KRH06045	Soybean	cytosol	67.86	85.07
PGSC0003DMT400064019	Potato	cytosol, extracellular	67.06	83.66
KRH26285	Soybean	endoplasmic reticulum	66.67	83.58
EES18842	Sorghum	cytosol	67.86	83.41
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	66.67	83.17
Zm00001d003588_P002	Maize	cytosol, extracellular	48.81	82.55
Zm00001d035741_P002	Maize	cytosol	67.06	82.44
CDY47919	Canola	vacuole	65.08	79.61
Bra038676.1-P	Field mustard	vacuole	65.08	79.61
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	64.29	79.41
TraesCS1B01G019100.2	Wheat	golgi	64.29	79.02
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	64.29	79.02
CDX73855	Canola	cytosol	64.29	78.64
CDY56593	Canola	cytosol	64.29	78.64
AT3G11730.1	Thale cress	cytosol	63.89	78.54
Bra001418.1-P	Field mustard	cytosol, extracellular	63.89	78.16
GSMUA_Achr3P32240_001	Banana	cytosol	61.9	77.23
GSMUA_Achr7P24260_001	Banana	cytosol	61.51	76.73
TraesCS2B01G327900.1	Wheat	cytosol	62.7	76.7
EES10859	Sorghum	cytosol	62.7	76.33
GSMUA_Achr2P18340_001	Banana	plasma membrane	61.11	76.24
GSMUA_Achr8P15030_001	Banana	cytosol	60.71	75.37
TraesCS2A01G311000.3	Wheat	cytosol	62.7	74.18
GSMUA_Achr11P...	Banana	cytosol	59.52	73.89
TraesCS2D01G309200.2	Wheat	cytosol	62.3	73.71
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	63.1	70.67
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	60.71	67.4
Zm00001d005215_P001	Maize	cytosol	40.08	66.45
Zm00001d003789_P002	Maize	extracellular, plasma membrane	58.33	55.68
GSMUA_Achr7P06570_001	Banana	cytosol	60.71	55.64
GSMUA_Achr6P34270_001	Banana	cytosol	45.24	52.78
GSMUA_AchrUn_...	Banana	cytosol	44.84	52.31
GSMUA_Achr10P...	Banana	cytosol	44.84	52.31
GSMUA_Achr9P03220_001	Banana	cytosol	44.44	51.85
GSMUA_Achr11P...	Banana	cytosol	44.44	51.85
GSMUA_Achr8P02620_001	Banana	cytosol	44.05	51.39
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	61.11	51.16
GSMUA_Achr10P...	Banana	cytosol	43.65	50.93
GSMUA_Achr9P27910_001	Banana	plasma membrane	36.9	44.08
GSMUA_Achr3P04210_001	Banana	cytosol	36.51	43.6
GSMUA_Achr4P09730_001	Banana	cytosol	34.13	40.76
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	22.22	40.29
GSMUA_Achr8P25750_001	Banana	cytosol	31.75	36.2
GSMUA_Achr4P01720_001	Banana	endoplasmic reticulum, extracellular	34.13	34.4

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G17450_001	EnsemblPlants:GSMUA_Achr6P17450_001	EnsemblPlants:GSMUA_Achr6T17450_001
UniProt:M0T7U3	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296078B	SEG:seg

Description

Ras-related protein RABD1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17450_001]

Coordinates

chr6:-:11726896..11730178

Molecular Weight (calculated)

28670.4 Da

IEP (calculated)

4.829

GRAVY (calculated)

-0.246

Length

252 amino acids

Sequence
(BLAST)

001: MLPPWEECET PERTREKLDA ILPLRLPILL SELQFIVDRR TSVGFYPQSI DMNNEYDYLF KLLLIGDSSV GKSCLLIRFA DDSYVDSYIS TIGVDFKIRT
101: VELDGKTIKL QIWDTAGQER FRTITSSYYR GAHGIIIVYD ITEMESFNNI KQWLSEIDRY ASDSVCKLLV GNKCDLVEDR VVETEKAKAF ADSLGIPFIE
201: TSAKDSINVE KAFLTMCAEI KKRMGNQHTA DTKPTTVQMK GQPIEQKSSC CS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.