Factsheet for TraesCS2B01G327900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3D01G106500.1	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G309200.2	Wheat	cytosol	99.51	96.24
TraesCS2A01G311000.3	Wheat	cytosol	99.51	96.24
EES10859	Sorghum	cytosol	90.29	89.86
Zm00001d003588_P002	Maize	cytosol, extracellular	64.08	88.59
Zm00001d005215_P001	Maize	cytosol	59.22	80.26
VIT_12s0035g01150.t01	Wine grape	vacuole	76.7	78.22
GSMUA_Achr10P...	Banana	cytosol	75.73	77.23
KRH06045	Soybean	cytosol	74.76	76.62
PGSC0003DMT400064019	Potato	cytosol, extracellular	74.76	76.24
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	74.76	76.24
KRH26285	Soybean	endoplasmic reticulum	74.27	76.12
TraesCS1B01G019100.2	Wheat	golgi	75.73	76.1
CDY56593	Canola	cytosol	73.79	73.79
CDX73855	Canola	cytosol	73.79	73.79
AT3G11730.1	Thale cress	cytosol	73.3	73.66
CDY47919	Canola	vacuole	73.3	73.3
Bra001418.1-P	Field mustard	cytosol, extracellular	73.3	73.3
Bra038676.1-P	Field mustard	vacuole	73.3	73.3
TraesCS3B01G070300.2	Wheat	cytosol	69.9	70.94
TraesCS3B01G230700.1	Wheat	cytosol	70.39	65.61
Zm00001d003789_P002	Maize	extracellular, plasma membrane	82.04	64.02
GSMUA_Achr6P17450_001	Banana	cytosol	76.7	62.7
TraesCS3B01G388900.1	Wheat	cytosol	53.88	51.39
TraesCS5B01G489300.1	Wheat	golgi	52.91	50.93
TraesCS1B01G295600.1	Wheat	cytosol	52.91	50.93
TraesCS5B01G255300.1	Wheat	cytosol	40.78	44.92
TraesCS2B01G350600.1	Wheat	cytosol	44.17	43.33
TraesCS6B01G230400.2	Wheat	cytosol	43.69	42.86
TraesCS3B01G547700.1	Wheat	plastid	31.07	30.77
TraesCS2B01G542700.1	Wheat	cytosol	32.52	30.45

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS2B01G327900	EnsemblPlants:TraesCS2B01G327900.1	TIGR:cd01869	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:470057710..470059287

Molecular Weight (calculated)

23060.5 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.261

Length

206 amino acids

Sequence
(BLAST)

001: MGNEFDYLFK LLLIGDSSVG KSCFLLRFSD DSYVDSYIST IGVDFKIRTL EMDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDI TDMESFNNVK
101: QWLSEIDKYA NDSVRKLLVG NKCDLAESRV VDTAVAQAYA DEMGIPFLET SAKESINVEE AFLAMSAAIK KSKAGGLERK ASNLVQMKGQ PIQQQQHKQK
201: SSCCST

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.