Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d037747_P001 | |
| Zm00001d039213_P001 | |
| Zm00001d039455_P002 | |
| Zm00001d042846_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G327900.1 | Wheat | cytosol | 88.59 | 64.08 |
| EES10859 | Sorghum | cytosol | 88.59 | 63.77 |
| TraesCS2D01G309200.2 | Wheat | cytosol | 88.59 | 61.97 |
| TraesCS2A01G311000.3 | Wheat | cytosol | 88.59 | 61.97 |
| KRH06045 | Soybean | cytosol | 83.22 | 61.69 |
| VIT_12s0035g01150.t01 | Wine grape | vacuole | 83.22 | 61.39 |
| GSMUA_Achr10P... | Banana | cytosol | 83.22 | 61.39 |
| KRH26285 | Soybean | endoplasmic reticulum | 82.55 | 61.19 |
| Solyc01g103370.2.1 | Tomato | endoplasmic reticulum | 82.55 | 60.89 |
| PGSC0003DMT400064019 | Potato | cytosol, extracellular | 82.55 | 60.89 |
| Zm00001d005215_P001 | Maize | cytosol | 60.4 | 59.21 |
| Zm00001d035741_P002 | Maize | cytosol | 80.54 | 58.54 |
| Zm00001d011162_P002 | Maize | plasma membrane | 78.52 | 57.64 |
| CDY47919 | Canola | vacuole | 78.52 | 56.8 |
| Bra038676.1-P | Field mustard | vacuole | 78.52 | 56.8 |
| CDY56593 | Canola | cytosol | 77.85 | 56.31 |
| CDX73855 | Canola | cytosol | 77.85 | 56.31 |
| AT3G11730.1 | Thale cress | cytosol | 77.18 | 56.1 |
| Bra001418.1-P | Field mustard | cytosol, extracellular | 77.18 | 55.83 |
| Zm00001d003789_P002 | Maize | extracellular, plasma membrane | 87.25 | 49.24 |
| GSMUA_Achr6P17450_001 | Banana | cytosol | 82.55 | 48.81 |
| Zm00001d051336_P001 | Maize | plastid | 77.85 | 42.65 |
| Zm00001d010538_P005 | Maize | cytosol | 58.39 | 40.47 |
| Zm00001d034638_P001 | Maize | cytosol | 58.39 | 40.47 |
| Zm00001d038380_P001 | Maize | extracellular, plasma membrane | 58.39 | 40.47 |
| Zm00001d025660_P001 | Maize | plasma membrane, plastid | 48.99 | 34.76 |
| Zm00001d017026_P003 | Maize | cytosol, endoplasmic reticulum, nucleus | 48.99 | 32.3 |
| Zm00001d003347_P003 | Maize | cytosol | 38.93 | 31.02 |
| Zm00001d017456_P003 | Maize | cytosol | 78.52 | 29.18 |
| Zm00001d050915_P004 | Maize | cytosol | 47.65 | 28.63 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6E9W3 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | ProteinID:ONM17183.1 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF827 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI0008447FD0 | EnsemblPlantsGene:Zm00001d003588 | EnsemblPlants:Zm00001d003588_P002 | EnsemblPlants:Zm00001d003588_T002 | : | : |
Description
Ras-related protein RABD1
Coordinates
chr2:-:49077123..49078723
Molecular Weight (calculated)
16887.1 Da
IEP (calculated)
4.956
GRAVY (calculated)
-0.130
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNEFDYLFK LLLIGDSSVG KSCFLLRFAD DSYVDSYIST IGVDFKIRTV EVEGKTVKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDI TDMESFNNVK
101: QWLDEIDRYA NDSVRKLLVG NKCDLAENRA VDTSVAQVKK LPSSCSSIL
101: QWLDEIDRYA NDSVRKLLVG NKCDLAENRA VDTSVAQVKK LPSSCSSIL
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST
Arabidopsis Description
RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.