Factsheet for GSMUA_Achr10P10970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
cytosol 3
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr5P28860_001
GSMUA_Achr6P33560_001
GSMUA_Achr7P09070_001
GSMUA_Achr8P02250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944
AT3G11730.1	GSMUA_Achr10P...	AT3G54120.1	21798944
AT3G11730.1	GSMUA_Achr6P33560_001	AT3G54120.1	21798944
AT3G11730.1	GSMUA_Achr8P02250_001	AT3G54120.1	21798944
AT3G11730.1	GSMUA_Achr5P28860_001	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01150.t01	Wine grape	vacuole	85.64	85.64
KRH06045	Soybean	cytosol	84.16	84.58
Zm00001d003588_P002	Maize	cytosol, extracellular	61.39	83.22
KRH26285	Soybean	endoplasmic reticulum	82.67	83.08
EES18842	Sorghum	cytosol	83.17	81.95
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	81.68	81.68
PGSC0003DMT400064019	Potato	cytosol, extracellular	81.68	81.68
Zm00001d035741_P002	Maize	cytosol	82.67	81.46
Bra038676.1-P	Field mustard	vacuole	81.19	79.61
CDY47919	Canola	vacuole	81.19	79.61
CDX73855	Canola	cytosol	79.7	78.16
CDY56593	Canola	cytosol	79.7	78.16
Bra001418.1-P	Field mustard	cytosol, extracellular	79.21	77.67
AT3G11730.1	Thale cress	cytosol	78.71	77.56
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	78.22	77.07
TraesCS1B01G019100.2	Wheat	golgi	78.22	77.07
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	77.72	76.96
TraesCS2B01G327900.1	Wheat	cytosol	77.23	75.73
EES10859	Sorghum	cytosol	77.23	75.36
GSMUA_Achr3P32240_001	Banana	cytosol	74.75	74.75
GSMUA_Achr7P24260_001	Banana	cytosol	74.26	74.26
GSMUA_Achr6P17450_001	Banana	cytosol	92.08	73.81
GSMUA_Achr2P18340_001	Banana	plasma membrane	73.76	73.76
TraesCS2A01G311000.3	Wheat	cytosol	77.23	73.24
GSMUA_Achr8P15030_001	Banana	cytosol	73.27	72.91
TraesCS2D01G309200.2	Wheat	cytosol	76.73	72.77
GSMUA_Achr11P...	Banana	cytosol	71.78	71.43
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	77.23	69.33
Zm00001d005215_P001	Maize	cytosol	49.51	65.79
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	73.27	65.2
Zm00001d003789_P002	Maize	extracellular, plasma membrane	73.27	56.06
GSMUA_Achr7P06570_001	Banana	cytosol	72.28	53.09
GSMUA_Achr6P34270_001	Banana	cytosol	54.95	51.39
GSMUA_AchrUn_...	Banana	cytosol	54.46	50.93
GSMUA_Achr10P...	Banana	cytosol	54.46	50.93
GSMUA_Achr9P03220_001	Banana	cytosol	53.96	50.46
GSMUA_Achr11P...	Banana	cytosol	53.96	50.46
GSMUA_Achr8P02620_001	Banana	cytosol	53.47	50.0
GSMUA_Achr10P...	Banana	cytosol	52.97	49.54
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	73.27	49.17
GSMUA_Achr9P27910_001	Banana	plasma membrane	45.05	43.13
GSMUA_Achr3P04210_001	Banana	cytosol	44.55	42.65
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	28.22	41.01
GSMUA_Achr4P09730_001	Banana	cytosol	42.57	40.76
GSMUA_Achr8P25750_001	Banana	cytosol	36.63	33.48
GSMUA_Achr4P01720_001	Banana	endoplasmic reticulum, extracellular	41.09	33.2

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr10G10970_001	EnsemblPlants:GSMUA_Achr10P10970_001	EnsemblPlants:GSMUA_Achr10T10970_001
UniProt:M0RH73	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002948A0A	:

Description

Ras-related protein RABD1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G10970_001]

Coordinates

chr10:+:20600478..20604067

Molecular Weight (calculated)

22795.3 Da

IEP (calculated)

5.361

GRAVY (calculated)

-0.184

Length

202 amino acids

Sequence
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DSYVDSYIST IGVDFKIRTV ELDGKTVKLQ IWDTAGQERF RTITSSYYCG AHGIIIVYDI TEMESFDNIR
101: QWLSEIDRYA NDSVCKLLVG NKCDLVENRV VEMEKAKAFA DSLCIPFIET SAKDSINVEK AFLTMCAEIK KRMGNQHSAQ RAPSTTVQMK GQPIQQKSSC
201: CS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.