Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | plasma membrane | 68.02 | 73.04 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 62.75 | 58.71 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 46.96 | 55.5 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 46.96 | 55.5 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 46.56 | 55.02 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 45.75 | 54.07 |
| KRH75801 | Soybean | plasma membrane | 45.34 | 53.59 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 42.91 | 50.0 |
| Zm00001d042846_P001 | Maize | plasma membrane | 40.89 | 48.1 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 38.46 | 46.8 |
| Os04t0367400-02 | Rice | plasma membrane | 40.08 | 46.48 |
| Bra003171.1-P | Field mustard | plasma membrane | 38.06 | 46.31 |
| CDY51584 | Canola | plasma membrane | 37.65 | 45.81 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 36.44 | 44.34 |
| Bra007047.1-P | Field mustard | golgi, plasma membrane, vacuole | 36.03 | 43.41 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 36.03 | 43.41 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 34.82 | 42.36 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 34.82 | 41.95 |
| OQU78555 | Sorghum | extracellular | 36.03 | 40.27 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 33.6 | 35.47 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 31.98 | 35.43 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 30.77 | 33.04 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 33.2 | 32.8 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 32.39 | 31.75 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 31.98 | 30.62 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 30.36 | 29.88 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 26.72 | 29.6 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 33.6 | 29.43 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 25.91 | 29.22 |
| GSMUA_Achr5P07570_001 | Banana | golgi, peroxisome, plasma membrane | 28.74 | 28.63 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 24.29 | 28.57 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 29.15 | 28.57 |
| GSMUA_Achr10P... | Banana | golgi, peroxisome, plasma membrane | 28.34 | 28.23 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 28.74 | 28.06 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 27.94 | 27.49 |
| GSMUA_Achr6P15870_001 | Banana | golgi, peroxisome, plasma membrane | 27.53 | 27.42 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, peroxisome | 21.86 | 27.27 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 25.91 | 25.81 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 25.1 | 25.62 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 13.77 | 22.67 |
| GSMUA_AchrUn_... | Banana | golgi | 26.32 | 18.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P02250_001 | EnsemblPlants:GSMUA_Achr8T02250_001 | EnsemblPlantsGene:GSMUA_Achr8G02250_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF65 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000296DF73 | UniProt:M0TLX7 | MapMan:13.7.2.1 | : | : |
Description
Putative Reticulon-like protein B12 [Source:GMGC_GENE;Acc:GSMUA_Achr8G02250_001]
Coordinates
chr8:-:1646900..1649694
Molecular Weight (calculated)
27930.5 Da
IEP (calculated)
9.298
GRAVY (calculated)
0.247
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQLIWLKH SSEKNELLRR RPIMISDPDR PVAGSSPRSL ARQRSVHDIF GSGIVADVIL WRRKDVTIGI LVGALASWVV FEAAGYTLLS LVSNVLLLLI
101: CVLFAWAKAA GILNRPPPPI PEMHLSEEMT HEAAVFVRFH MNMVLSAFND IVQGKDSKLF YTIALWLWLI SFVGGSTDIL TLGYTSVVVM LTVPALYEKH
201: EDGLDRLTKF ACKEVQMYER IYSECLGKYF TKAKKWALEK KKLLTDV
101: CVLFAWAKAA GILNRPPPPI PEMHLSEEMT HEAAVFVRFH MNMVLSAFND IVQGKDSKLF YTIALWLWLI SFVGGSTDIL TLGYTSVVVM LTVPALYEKH
201: EDGLDRLTKF ACKEVQMYER IYSECLGKYF TKAKKWALEK KKLLTDV
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.