Subcellular Localization
min:
: max
Winner_takes_all: golgi, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007047.1-P | Field mustard | golgi, plasma membrane, vacuole | 100.0 | 100.0 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 94.15 | 94.15 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 82.44 | 83.25 |
| CDY51584 | Canola | plasma membrane | 82.44 | 83.25 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 79.02 | 79.8 |
| KRH75801 | Soybean | plasma membrane | 55.61 | 54.55 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 54.63 | 53.59 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 53.66 | 52.63 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 50.73 | 49.76 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 49.76 | 48.8 |
| GSMUA_Achr10P... | Banana | plasma membrane | 45.85 | 40.87 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 43.41 | 36.03 |
| Zm00001d042846_P001 | Maize | plasma membrane | 36.59 | 35.71 |
| Os04t0367400-02 | Rice | plasma membrane | 37.07 | 35.68 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 36.1 | 34.91 |
| OQU78555 | Sorghum | extracellular | 36.59 | 33.94 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 43.41 | 33.71 |
| CDX82294 | Canola | plastid | 32.2 | 33.67 |
| CDY22971 | Canola | plasma membrane | 32.2 | 33.67 |
| CDY46172 | Canola | plastid | 33.17 | 33.66 |
| CDX99221 | Canola | plasma membrane | 32.68 | 33.0 |
| CDY22970 | Canola | plasma membrane | 31.22 | 32.65 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 30.73 | 31.03 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 32.68 | 28.63 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 33.17 | 28.45 |
| CDY36282 | Canola | plasma membrane | 30.73 | 28.25 |
| CDY08567 | Canola | cytosol | 33.17 | 28.22 |
| CDX71213 | Canola | plasma membrane | 27.32 | 27.59 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 27.32 | 27.59 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 33.66 | 27.49 |
| CDY67571 | Canola | plasma membrane | 29.76 | 27.23 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 33.17 | 27.09 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 29.27 | 26.79 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 33.17 | 26.77 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 32.2 | 26.4 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 32.2 | 26.4 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 32.68 | 26.38 |
| CDX75962 | Canola | plasma membrane | 28.78 | 26.34 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 32.2 | 26.29 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.71 | 25.9 |
| CDY48510 | Canola | cytosol | 30.24 | 25.51 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 22.93 | 25.27 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 29.76 | 25.1 |
| CDY62522 | Canola | cytosol | 9.76 | 25.0 |
| CDX96038 | Canola | plasma membrane | 24.88 | 24.17 |
| CDY01898 | Canola | plasma membrane | 24.88 | 24.06 |
| CDX81500 | Canola | plasma membrane | 24.39 | 24.04 |
| CDY00916 | Canola | plasma membrane | 27.8 | 23.85 |
| CDY08616 | Canola | plasma membrane | 27.8 | 23.85 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 31.71 | 23.64 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 30.24 | 23.22 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 31.22 | 23.19 |
| CDY24806 | Canola | cytosol | 30.73 | 22.99 |
| CDY10954 | Canola | cytosol | 30.24 | 22.96 |
| CDY41666 | Canola | cytosol | 30.24 | 22.46 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 17.56 | 22.36 |
| CDY05135 | Canola | mitochondrion | 30.73 | 20.13 |
| CDY46067 | Canola | plasma membrane | 18.54 | 18.27 |
| CDX76854 | Canola | plasma membrane | 18.05 | 17.87 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 21.46 | 17.74 |
| CDX89122 | Canola | extracellular, mitochondrion | 13.17 | 17.65 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 20.98 | 17.55 |
| CDY56712 | Canola | mitochondrion | 29.27 | 16.9 |
| CDY12701 | Canola | plasma membrane | 24.39 | 16.56 |
Protein Annotations
| EnsemblPlants:CDX78209 | EnsemblPlantsGene:GSBRNA2T00129526001 | GO:A0A078CQ63 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF65 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX78209 | ProteinID:CDX78209.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00025428A0 | MapMan:13.7.2.1 | : | : | : |
Description
BnaA09g34040D
Coordinates
chrLK031814:-:1779939..1780921
Molecular Weight (calculated)
23332.0 Da
IEP (calculated)
8.056
GRAVY (calculated)
0.460
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMGSSLEKL FKRERTVHEI LGGGIVADVM LWRKKNVSVG IVTVTIGSWM VFETFSYTIL TLLSSVLLLL LSIFFLWSKS ASILNRPSPP LTECQVSEEM
101: AEEASKFLRI HVNKLLQVSY DIAMGRDAEL FIRVAVYLFL IAFIGSLMDF QTLCHTGVLV VMAVPAFYER YEDCIDGSIV LIYNKAKELY LRFKIWAYPE
201: HKKLS
101: AEEASKFLRI HVNKLLQVSY DIAMGRDAEL FIRVAVYLFL IAFIGSLMDF QTLCHTGVLV VMAVPAFYER YEDCIDGSIV LIYNKAKELY LRFKIWAYPE
201: HKKLS
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [cytosol,plasma membrane,vacuole]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.