Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033951.1-P | Field mustard | plasma membrane | 99.67 | 99.67 |
| CDX81500 | Canola | plasma membrane | 67.22 | 97.6 |
| CDY01898 | Canola | plasma membrane | 61.59 | 87.74 |
| AT1G68230.2 | Thale cress | plasma membrane | 62.25 | 87.44 |
| CDX96038 | Canola | plasma membrane | 60.93 | 87.2 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 22.85 | 44.81 |
| KRH35899 | Soybean | plasma membrane | 31.13 | 44.34 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 32.12 | 43.89 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 22.19 | 36.02 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 25.83 | 34.82 |
| Os01t0139000-00 | Rice | plasma membrane | 24.5 | 34.74 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 24.83 | 34.72 |
| CDX75962 | Canola | plasma membrane | 25.5 | 34.38 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 23.84 | 34.29 |
| EES02516 | Sorghum | peroxisome, plastid | 24.5 | 33.95 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 24.83 | 33.19 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 24.5 | 33.18 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 25.5 | 32.91 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 25.17 | 32.9 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 23.84 | 32.88 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 23.84 | 32.88 |
| CDY67571 | Canola | plasma membrane | 24.17 | 32.59 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 25.17 | 32.07 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 23.18 | 31.96 |
| Zm00001d038910_P001 | Maize | plasma membrane | 23.84 | 31.72 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 26.49 | 31.5 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 22.85 | 31.22 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 26.16 | 31.1 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 23.51 | 30.34 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 23.18 | 29.91 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 15.89 | 29.81 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 22.85 | 29.49 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 23.84 | 28.69 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 23.84 | 28.69 |
| CDX71213 | Canola | plasma membrane | 18.21 | 27.09 |
| Zm00001d008590_P001 | Maize | plastid | 11.92 | 27.07 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 23.84 | 26.97 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 22.19 | 26.8 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 22.19 | 26.69 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 17.88 | 26.6 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 21.85 | 26.4 |
| CDY48510 | Canola | cytosol | 21.19 | 26.34 |
| CDX82294 | Canola | plastid | 16.89 | 26.02 |
| CDY22971 | Canola | plasma membrane | 16.89 | 26.02 |
| CDY22970 | Canola | plasma membrane | 16.89 | 26.02 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 32.12 | 25.94 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 20.86 | 25.93 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 17.22 | 25.62 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 21.19 | 25.5 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 23.18 | 25.45 |
| GSMUA_AchrUn_... | Banana | golgi | 29.47 | 25.28 |
| CDY46172 | Canola | plastid | 16.89 | 25.25 |
| CDY10954 | Canola | cytosol | 22.52 | 25.19 |
| CDY62522 | Canola | cytosol | 6.62 | 25.0 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 27.15 | 24.85 |
| CDY24806 | Canola | cytosol | 22.52 | 24.82 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 22.52 | 24.64 |
| CDY41666 | Canola | cytosol | 22.52 | 24.64 |
| CDX99221 | Canola | plasma membrane | 16.56 | 24.63 |
| CDY51584 | Canola | plasma membrane | 16.56 | 24.63 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 16.56 | 24.39 |
| CDX89122 | Canola | extracellular, mitochondrion | 12.25 | 24.18 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 27.81 | 24.14 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 16.23 | 23.9 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 18.87 | 23.85 |
| CDY08567 | Canola | cytosol | 18.87 | 23.65 |
| CDY36282 | Canola | plasma membrane | 17.22 | 23.32 |
| CDY08616 | Canola | plasma membrane | 18.21 | 23.01 |
| CDY00916 | Canola | plasma membrane | 18.21 | 23.01 |
| CDY05135 | Canola | mitochondrion | 23.51 | 22.68 |
| HORVU1Hr1G083110.3 | Barley | plastid | 21.19 | 21.92 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 15.89 | 19.59 |
| CDX76854 | Canola | plasma membrane | 12.25 | 17.87 |
| CDY46067 | Canola | plasma membrane | 11.92 | 17.31 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 12.58 | 15.32 |
| CDY56712 | Canola | mitochondrion | 17.55 | 14.93 |
Protein Annotations
| MapMan:13.7.2.1 | GO:A0A078FHL8 | UniProt:A0A078FHL8 | EnsemblPlants:CDY12701 | ProteinID:CDY12701 | ProteinID:CDY12701.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00070230001 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF124 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0004EE1879 | SEG:seg |
Description
BnaA02g13690DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHL8]
Coordinates
chrLK032025:+:818393..820239
Molecular Weight (calculated)
34995.4 Da
IEP (calculated)
8.667
GRAVY (calculated)
0.120
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRLTHWSIF CWTYADSTVL IATILYYLAH SMADTGGWEK HQNDGISMTT PADAPKQHNT YFDKAYNQHL FGFILAVLLR QGYQKGYIAI YGSEMDEHGA
101: SSSRKQRSLY HNLGGGHFAD VMFWKNKKES GTILAVFTLI WFLFEVVEYP FITFICQILL VSIFIFLIWS YIGSSQLIHR EPPSINDLKI SESTWRFLFN
201: KINWFIIKLY DISSGKDFRL LVLAVVSLWI LSVVGNYFSS LTLLYIVFVA LETIPILYEL YEEELNYAAS KSGRDMKKLF NDFNSKVINK IPKADAKTRR
301: HM
101: SSSRKQRSLY HNLGGGHFAD VMFWKNKKES GTILAVFTLI WFLFEVVEYP FITFICQILL VSIFIFLIWS YIGSSQLIHR EPPSINDLKI SESTWRFLFN
201: KINWFIIKLY DISSGKDFRL LVLAVVSLWI LSVVGNYFSS LTLLYIVFVA LETIPILYEL YEEELNYAAS KSGRDMKKLF NDFNSKVINK IPKADAKTRR
301: HM
001: MAVFGYEMDE HRASSSRRRR SLYHNLGGGR FADIMFWKNK KESGTILGVF TLIWFLFEVV EYPFITFLCQ ILLLFIFIFL IWSYIGSSQL IQSKPPSIND
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
Arabidopsis Description
RTNLB14Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178WQE6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.