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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g008890.2.1 Tomato plasma membrane 33.69 57.01
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 22.73 55.19
KRH35899 Soybean plasma membrane 29.95 52.83
TraesCS3B01G294700.1 Wheat plasma membrane 27.54 47.03
TraesCS3A01G261500.1 Wheat plasma membrane 27.27 46.58
HORVU3Hr1G064240.2 Barley plasma membrane 27.27 46.58
Os01t0691400-00 Rice cytosol, peroxisome 28.34 45.89
VIT_17s0000g03260.t01 Wine grape plasma membrane 25.94 45.75
GSMUA_Achr8P31770_001 Banana peroxisome 27.27 45.74
EES19907 Sorghum cytosol, peroxisome, plasma membrane 27.54 45.58
KXG33168 Sorghum golgi, peroxisome, plasma membrane 25.67 44.44
GSMUA_Achr2P07230_001 Banana golgi, plasma membrane, vacuole 24.87 44.29
Zm00001d038910_P001 Maize plasma membrane 26.74 44.05
Bra004291.1-P Field mustard plasma membrane 24.6 43.6
CDX96038 Canola plasma membrane 24.6 43.6
CDY01898 Canola plasma membrane 24.6 43.4
TraesCS1B01G393700.1 Wheat cytosol, peroxisome, plasma membrane 27.01 43.16
TraesCS1D01G380400.1 Wheat cytosol, peroxisome, plasma membrane 26.74 42.73
TraesCS1A01G373800.1 Wheat cytosol, peroxisome, plasma membrane 26.74 42.73
AT1G68230.2 Thale cress plasma membrane 23.53 40.93
CDX81500 Canola plasma membrane 22.73 40.87
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 24.06 40.72
TraesCS3D01G050800.1 Wheat mitochondrion 23.8 38.03
EES02516 Sorghum peroxisome, plastid 21.66 37.16
Os01t0139000-00 Rice plasma membrane 21.12 37.09
GSMUA_AchrUn_... Banana golgi 34.22 36.36
TraesCS3B01G060400.1 Wheat mitochondrion 22.99 36.29
VIT_12s0028g01090.t01 Wine grape cytosol, peroxisome, plasma membrane 23.53 35.48
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 23.53 34.92
HORVU1Hr1G083110.3 Barley plastid 26.47 33.9
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 22.99 33.73
VIT_02s0025g00590.t01 Wine grape mitochondrion 5.35 33.33
Zm00001d008590_P001 Maize plastid 11.5 32.33
CDY12701 Canola plasma membrane 25.94 32.12
Bra033951.1-P Field mustard plasma membrane 25.67 31.79
VIT_08s0007g01720.t01 Wine grape plasma membrane 17.65 31.58
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 17.11 30.92
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 20.05 29.53
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 27.01 29.02
TraesCS3A01G051200.1 Wheat cytosol 25.13 28.48
VIT_00s0253g00030.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 13.37 23.36
VIT_13s0067g02960.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 14.71 16.82
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 8.02 16.67
Protein Annotations
EntrezGene:100247313wikigene:100247313MapMan:13.7.2.1ProteinID:CCB50884ProteinID:CCB50884.1UniProt:F6HEV8
EMBL:FN595752GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR003388EntrezGene:LOC100247313
wikigene:LOC100247313PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF85InterPro:Reticulon
TMHMM:TMhelixUniParc:UPI0002109090ArrayExpress:VIT_01s0011g04030EnsemblPlantsGene:VIT_01s0011g04030EnsemblPlants:VIT_01s0011g04030.t01RefSeq:XP_002282955
RefSeq:XP_002282955.1SEG:seg::::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F6HEV8]
Coordinates
chr1:+:3678832..3683597
Molecular Weight (calculated)
42794.3 Da
IEP (calculated)
9.057
GRAVY (calculated)
0.118
Length
374 amino acids
Sequence
(BLAST)
001: MDLESIWFGF FTYWQRQDLC SFSLLQHVAV GGLEEMIAFA HVLSSIGLQV TAVDTWASPN SRRRAKHTAI YDIFIFNQKE WSMCINMLWV HLGGGLLTIY
101: RRRNRRKGGR KVQGNLPRHA KAIPFFLVLV PLPGSLEPLL IYITYSPESC KTTTSGIAMP IYSSDSDEQP ETPIRLFDHQ KSIHALLGGG KVADILLWRN
201: KYVSAAILIG FTIIWFLFEV LEYHFVTLLC YSMLFLMLAI FIWSNGAGYI NWNPPDVDKF TLSEHTVRSF HSKINTVLST FYRVSRGEDL ALLGVAIVTL
301: LTLSVIGDCF SSLNVLYIGF LCMETLPALY ERYEEQVDEI ADKGNRNVKK LYRKFDSHVL NKIPRGPVKE KKFR
Best Arabidopsis Sequence Match ( AT3G18260.1 )
(BLAST)
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.