Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96038 | Canola | plasma membrane | 96.23 | 96.68 |
| CDX81500 | Canola | plasma membrane | 87.26 | 88.94 |
| AT1G68230.2 | Thale cress | plasma membrane | 84.43 | 83.26 |
| CDY12701 | Canola | plasma membrane | 87.74 | 61.59 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 31.6 | 43.51 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 44.34 | 42.53 |
| KRH35899 | Soybean | plasma membrane | 42.45 | 42.45 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 31.6 | 36.02 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 33.96 | 34.29 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 35.85 | 33.93 |
| CDX75962 | Canola | plasma membrane | 35.38 | 33.48 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 33.96 | 33.33 |
| Os01t0139000-00 | Rice | plasma membrane | 33.49 | 33.33 |
| CDY67571 | Canola | plasma membrane | 34.91 | 33.04 |
| EES02516 | Sorghum | peroxisome, plastid | 33.96 | 33.03 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 33.49 | 32.42 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 34.43 | 32.3 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 34.91 | 31.62 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 34.43 | 31.6 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 32.55 | 31.51 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 32.08 | 31.05 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 32.55 | 30.94 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 32.08 | 30.77 |
| Zm00001d038910_P001 | Maize | plasma membrane | 32.55 | 30.4 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 33.96 | 30.38 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 36.32 | 30.32 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 35.85 | 29.92 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 22.17 | 29.19 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 33.49 | 28.29 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 33.02 | 27.89 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 30.19 | 27.35 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 30.19 | 27.35 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 25.94 | 27.09 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 29.72 | 26.92 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 33.49 | 26.59 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.13 | 26.4 |
| CDX71213 | Canola | plasma membrane | 25.0 | 26.11 |
| CDY51584 | Canola | plasma membrane | 25.0 | 26.11 |
| CDX82294 | Canola | plastid | 24.06 | 26.02 |
| CDY22970 | Canola | plasma membrane | 24.06 | 26.02 |
| CDY22971 | Canola | plasma membrane | 24.06 | 26.02 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 30.66 | 26.0 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 30.66 | 25.9 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 24.53 | 25.62 |
| CDY10954 | Canola | cytosol | 32.55 | 25.56 |
| CDY24806 | Canola | cytosol | 33.02 | 25.55 |
| CDX89122 | Canola | extracellular, mitochondrion | 18.4 | 25.49 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 33.02 | 25.45 |
| CDY41666 | Canola | cytosol | 33.02 | 25.36 |
| CDY46172 | Canola | plastid | 24.06 | 25.25 |
| CDY48510 | Canola | cytosol | 28.77 | 25.1 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 29.72 | 25.1 |
| CDY62522 | Canola | cytosol | 9.43 | 25.0 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 32.55 | 25.0 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 24.06 | 24.88 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 24.06 | 24.88 |
| Zm00001d008590_P001 | Maize | plastid | 15.57 | 24.81 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 28.3 | 24.69 |
| CDX99221 | Canola | plasma membrane | 23.58 | 24.63 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 43.4 | 24.6 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 26.89 | 23.85 |
| CDY00916 | Canola | plasma membrane | 26.89 | 23.85 |
| CDY08616 | Canola | plasma membrane | 26.89 | 23.85 |
| CDY36282 | Canola | plasma membrane | 25.0 | 23.77 |
| CDY08567 | Canola | cytosol | 26.89 | 23.65 |
| CDY05135 | Canola | mitochondrion | 33.49 | 22.68 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 34.43 | 22.12 |
| GSMUA_AchrUn_... | Banana | golgi | 35.85 | 21.59 |
| HORVU1Hr1G083110.3 | Barley | plastid | 29.25 | 21.23 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 33.96 | 20.69 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 23.11 | 20.0 |
| CDY46067 | Canola | plasma membrane | 19.34 | 19.71 |
| CDX76854 | Canola | plasma membrane | 18.87 | 19.32 |
| CDY56712 | Canola | mitochondrion | 25.94 | 15.49 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 17.92 | 15.32 |
Protein Annotations
| EnsemblPlants:CDY01898 | EnsemblPlantsGene:GSBRNA2T00113093001 | GO:A0A078EQT2 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF124 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDY01898 | ProteinID:CDY01898.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EEF1E1 | MapMan:13.7.2.1 | : | : | : |
Description
BnaC06g29380D
Coordinates
chrLK031929:+:1091601..1092629
Molecular Weight (calculated)
24652.4 Da
IEP (calculated)
9.902
GRAVY (calculated)
0.268
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIYGYEHGA SSRKRRSLYH NLGGGHFADI MFWKNKKESG TILAVFTLIW FLFEVVEYPF ITFLCQILLI SIFIFLIWSY IGSSQLIKRR PPSIDDLKIS
101: ESTWRVLFDK INWFIIKLYD VSSGTDFRLL VLAVVSLWIL SVVGNYFSSL TLLYIVFVGL ETIPMLYELY EEELNYAASK SGMNMKKLFD NFNSKVINKI
201: PKATGKTKRR SM
101: ESTWRVLFDK INWFIIKLYD VSSGTDFRLL VLAVVSLWIL SVVGNYFSSL TLLYIVFVGL ETIPMLYELY EEELNYAASK SGMNMKKLFD NFNSKVINKI
201: PKATGKTKRR SM
001: MAVFGYEMDE HRASSSRRRR SLYHNLGGGR FADIMFWKNK KESGTILGVF TLIWFLFEVV EYPFITFLCQ ILLLFIFIFL IWSYIGSSQL IQSKPPSIND
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
Arabidopsis Description
RTNLB14Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178WQE6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.