Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 97.21 | 97.21 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 95.62 | 96.0 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 94.02 | 94.4 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 88.05 | 81.55 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 72.51 | 72.22 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 68.13 | 67.32 |
| KRH59988 | Soybean | mitochondrion | 66.93 | 66.14 |
| TraesCS3A01G278800.1 | Wheat | golgi | 64.94 | 65.73 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 64.94 | 65.73 |
| Os01t0736900-01 | Rice | plasma membrane | 65.74 | 65.22 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 65.74 | 65.22 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 66.14 | 65.1 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 65.74 | 64.71 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 63.74 | 64.52 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 63.74 | 64.26 |
| Zm00001d043551_P003 | Maize | plasma membrane | 65.74 | 64.2 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 64.14 | 64.14 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 68.13 | 64.04 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 63.74 | 63.74 |
| Os05t0526400-01 | Rice | plasma membrane | 63.74 | 63.74 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 65.34 | 63.57 |
| Os01t0226300-01 | Rice | plasma membrane | 45.02 | 63.48 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 63.35 | 63.35 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 63.35 | 63.35 |
| CDY10954 | Canola | cytosol | 68.13 | 63.33 |
| CDY24806 | Canola | cytosol | 68.92 | 63.14 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 69.32 | 63.04 |
| Zm00001d012776_P001 | Maize | extracellular | 63.35 | 62.85 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 63.74 | 62.75 |
| CDY41666 | Canola | cytosol | 68.92 | 62.68 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 68.53 | 62.55 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 64.14 | 62.4 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 62.55 | 62.3 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 62.55 | 61.81 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 61.75 | 61.51 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 62.15 | 61.42 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 53.39 | 61.19 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 65.74 | 61.11 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 65.74 | 61.11 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 61.35 | 60.63 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 60.56 | 60.08 |
| Zm00001d020729_P001 | Maize | plasma membrane | 21.51 | 56.84 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 62.95 | 56.63 |
| Zm00001d020229_P001 | Maize | plasma membrane | 34.26 | 56.58 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 55.78 | 56.0 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 63.35 | 55.99 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 63.35 | 55.59 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 62.95 | 55.24 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 35.06 | 54.66 |
| CDY05135 | Canola | mitochondrion | 66.14 | 53.04 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 52.99 | 52.78 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 63.74 | 52.29 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 47.01 | 51.3 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 52.59 | 50.57 |
| EER89811 | Sorghum | peroxisome | 51.0 | 50.0 |
| Zm00001d016041_P001 | Maize | extracellular | 45.82 | 50.0 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 62.15 | 49.68 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 45.42 | 49.14 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 62.95 | 49.07 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 51.0 | 49.04 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.2 | 48.46 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.2 | 48.46 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.2 | 48.46 |
| Os06t0503400-01 | Rice | plasma membrane | 51.0 | 48.3 |
| CDY62522 | Canola | cytosol | 15.14 | 47.5 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 45.02 | 46.5 |
| CDY48510 | Canola | cytosol | 45.02 | 46.5 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 50.2 | 42.0 |
| HORVU7Hr1G081290.4 | Barley | plastid | 38.65 | 41.99 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 37.45 | 38.37 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 22.71 | 38.0 |
| CDX75962 | Canola | plasma membrane | 33.47 | 37.5 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 33.47 | 37.5 |
| CDY67571 | Canola | plasma membrane | 33.47 | 37.5 |
| CDY00916 | Canola | plasma membrane | 35.46 | 37.24 |
| CDY08616 | Canola | plasma membrane | 34.66 | 36.4 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 25.9 | 36.11 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 26.69 | 36.02 |
| CDX99221 | Canola | plasma membrane | 28.69 | 35.47 |
| CDY46172 | Canola | plastid | 28.29 | 35.15 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 27.89 | 34.48 |
| CDY51584 | Canola | plasma membrane | 27.89 | 34.48 |
| CDX82294 | Canola | plastid | 26.69 | 34.18 |
| CDY22970 | Canola | plasma membrane | 26.29 | 33.67 |
| CDY22971 | Canola | plasma membrane | 26.29 | 33.67 |
| CDX71213 | Canola | plasma membrane | 25.9 | 32.02 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 25.9 | 32.02 |
| CDX96038 | Canola | plasma membrane | 26.69 | 31.75 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 25.9 | 31.71 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 29.88 | 31.38 |
| CDX89122 | Canola | extracellular, mitochondrion | 19.12 | 31.37 |
| CDX81500 | Canola | plasma membrane | 25.9 | 31.25 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 25.5 | 31.22 |
| CDY01898 | Canola | plasma membrane | 25.9 | 30.66 |
| CDY08567 | Canola | cytosol | 29.08 | 30.29 |
| CDY36282 | Canola | plasma membrane | 26.69 | 30.04 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 25.5 | 25.81 |
| CDY56712 | Canola | mitochondrion | 36.26 | 25.63 |
| CDY46067 | Canola | plasma membrane | 19.92 | 24.04 |
| CDX76854 | Canola | plasma membrane | 19.52 | 23.67 |
| CDY12701 | Canola | plasma membrane | 26.69 | 22.19 |
Protein Annotations
| MapMan:13.7.2.1 | GO:A0A078GKB0 | UniProt:A0A078GKB0 | EnsemblPlants:CDY25557 | ProteinID:CDY25557 | ProteinID:CDY25557.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00032815001 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0004EE3923 | SEG:seg |
Description
BnaC09g11820DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKB0]
Coordinates
chrLK032176:+:514715..516261
Molecular Weight (calculated)
28282.7 Da
IEP (calculated)
9.860
GRAVY (calculated)
-0.044
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEHKHEES IMEKIAEKIH GHDNSSSSDS DDEKKASSIK TKIYRLFGRE KPVHKVFGGG KPADIFLWRN KKVSGGVLGA ATLSWILFEL LQYNLLTLFG
101: HISILALAVL FLWSSATTFI HKTPPHIPEV HIPEDVVLQL ASGLRNEINR GFTLLRNIAL GRDLKKFLMV VAGLWVLSKV GSSCNFLTLI YIATVLLFTV
201: PVLYEKYEDK VDDFGEKAMK EIKKQYAVLD EKVLSKVMSK IPRGAFNKKK D
101: HISILALAVL FLWSSATTFI HKTPPHIPEV HIPEDVVLQL ASGLRNEINR GFTLLRNIAL GRDLKKFLMV VAGLWVLSKV GSSCNFLTLI YIATVLLFTV
201: PVLYEKYEDK VDDFGEKAMK EIKKQYAVLD EKVLSKVMSK IPRGAFNKKK D
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.