CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46172	Canola	plastid	96.55	97.03
CDX82294	Canola	plastid	87.19	90.31
CDY22971	Canola	plasma membrane	84.73	87.76
CDY22970	Canola	plasma membrane	84.24	87.24
AT3G19460.3	Thale cress	plasma membrane	83.25	72.22
GSMUA_Achr7P05440_001	Banana	peroxisome, plasma membrane, vacuole	56.65	51.57
Zm00001d001901_P002	Maize	plasma membrane	48.77	50.0
EES11624	Sorghum	plasma membrane	48.77	50.0
Zm00001d026575_P001	Maize	mitochondrion, peroxisome, plasma membrane, plastid, vacuole	47.78	48.99
Os04t0670000-01	Rice	plasma membrane	47.78	48.74
TraesCS2D01G545200.1	Wheat	plasma membrane	46.31	47.47
CDX71213	Canola	plasma membrane	47.29	47.29
TraesCS2B01G574200.2	Wheat	plasma membrane	46.31	47.24
CDY48222	Canola	cytosol, endoplasmic reticulum, plasma membrane	46.8	46.8
TraesCS2A01G544000.1	Wheat	plasma membrane	45.81	46.73
GSMUA_Achr4P20190_001	Banana	cytosol, plastid	55.66	40.07
CDX67589	Canola	golgi, plasma membrane, vacuole	35.47	35.47
CDY51584	Canola	plasma membrane	34.48	34.48
HORVU2Hr1G122310.2	Barley	cytosol, plasma membrane	31.03	33.87
CDX78209	Canola	golgi, plasma membrane, vacuole	33.0	32.68
CDX73507	Canola	cytosol, golgi, plasma membrane	32.51	32.2
CDY36282	Canola	plasma membrane	33.0	30.04
CDY34396	Canola	cytosol, endoplasmic reticulum, nucleus	36.45	29.48
CDY00975	Canola	cytosol, endoplasmic reticulum, peroxisome	34.48	29.29
CDY08353	Canola	cytosol, endoplasmic reticulum, nucleus	35.96	29.2
CDY08567	Canola	cytosol	34.48	29.05
CDY38194	Canola	cytosol, nucleus, plasma membrane	35.47	28.8
CDY25557	Canola	cytosol, endoplasmic reticulum, nucleus	35.47	28.69
CDX79993	Canola	cytosol, peroxisome, plasma membrane	34.98	28.29
CDY42012	Canola	cytosol, peroxisome, plasma membrane	34.48	27.89
CDY10954	Canola	cytosol	36.45	27.41
CDY57657	Canola	cytosol, nucleus, plasma membrane	36.95	27.27
CDY44123	Canola	cytosol, nucleus, plasma membrane	36.95	27.17
CDY51936	Canola	endoplasmic reticulum, peroxisome, plasma membrane	29.56	26.79
CDY52012	Canola	cytosol, peroxisome, plasma membrane	33.5	26.77
CDY13240	Canola	cytosol, peroxisome, plasma membrane	21.18	26.71
CDX90792	Canola	cytosol, peroxisome, plasma membrane	34.98	26.59
CDY53913	Canola	cytosol, peroxisome, plasma membrane	33.0	26.38
CDY66516	Canola	endoplasmic reticulum, extracellular	24.14	26.34
CDX75962	Canola	plasma membrane	29.06	26.34
CDY08616	Canola	plasma membrane	30.54	25.94
CDY00916	Canola	plasma membrane	30.54	25.94
CDY67571	Canola	plasma membrane	28.57	25.89
CDY41666	Canola	cytosol	34.98	25.72
CDY24806	Canola	cytosol	34.48	25.55
CDY62522	Canola	cytosol	9.85	25.0
CDX96038	Canola	plasma membrane	25.12	24.17
CDX81500	Canola	plasma membrane	24.63	24.04
CDY07184	Canola	cytosol, peroxisome, plasma membrane	28.57	23.87
CDY01898	Canola	plasma membrane	24.63	23.58
CDY48510	Canola	cytosol	28.08	23.46
CDY05135	Canola	mitochondrion	34.98	22.68
CDY46067	Canola	plasma membrane	22.17	21.63
CDX76854	Canola	plasma membrane	21.18	20.77
CDX89122	Canola	extracellular, mitochondrion	14.78	19.61
CDX86802	Canola	cytosol, nucleus, peroxisome	23.65	19.59
CDY56712	Canola	mitochondrion	29.56	16.9
CDY12701	Canola	plasma membrane	24.63	16.56
CDX82165	Canola	endoplasmic reticulum, peroxisome, plasma membrane, plastid	20.2	16.53

Protein Annotations

EnsemblPlants:CDX99221	EnsemblPlantsGene:GSBRNA2T00107426001	GO:A0A078EDK2	InterPro:IPR003388	InterPro:Reticulon	PANTHER:PTHR10994
PANTHER:PTHR10994:SF65	PFAM:PF02453	PFscan:PS50845	ProteinID:CDX99221	ProteinID:CDX99221.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EDB42C	MapMan:13.7.2.1	:	:	:

Description

BnaC05g33360D

Coordinates

chrLK031909:-:242844..244749

Molecular Weight (calculated)

22507.7 Da

IEP (calculated)

10.020

GRAVY (calculated)

0.469

Length

203 amino acids

Sequence
(BLAST)

001: MGDSASSSSS SSTRVSVHNS LGGVADLLLW RNRTGAVIVL VSSTVFWFLF ERAGYNLLSF VSNVVLLLVA ILFLWAKSAS LLNRPLPPVP NMEIPEELAV
101: KAADDIRVWI NRVLSIASDI TIARNPIRLL QVSLVLWAIS YVGTFINSLT LVYIGILLSL SVPLVYEKYQ DHIDDKLNST SKVIRSISMK IPMMPVSKEK
201: KYQ

Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)

001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.