Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- endoplasmic reticulum 2
- plasma membrane 4
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82294 | Canola | plastid | 70.94 | 84.69 |
| Bra001748.1-P | Field mustard | plastid | 70.09 | 83.67 |
| CDY46172 | Canola | plastid | 72.22 | 83.66 |
| CDX99221 | Canola | plasma membrane | 72.22 | 83.25 |
| CDY22971 | Canola | plasma membrane | 68.8 | 82.14 |
| CDY22970 | Canola | plasma membrane | 68.8 | 82.14 |
| Bra022426.1-P | Field mustard | cytosol, plasma membrane, plastid | 71.79 | 68.85 |
| AT2G15280.1 | Thale cress | plasma membrane | 43.16 | 50.25 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 47.44 | 49.78 |
| Zm00001d001901_P002 | Maize | plasma membrane | 41.88 | 49.49 |
| Os04t0670000-01 | Rice | plasma membrane | 41.03 | 48.24 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 40.6 | 47.98 |
| EES11624 | Sorghum | plasma membrane | 40.6 | 47.98 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 40.17 | 47.47 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 40.17 | 47.24 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 40.17 | 47.24 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 47.44 | 39.36 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 28.63 | 36.02 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 28.63 | 33.0 |
| AT3G10915.7 | Thale cress | plasma membrane | 28.63 | 26.69 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 28.63 | 26.27 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 28.21 | 26.09 |
| AT3G18260.1 | Thale cress | plasma membrane | 24.36 | 25.33 |
| AT1G68230.2 | Thale cress | plasma membrane | 23.08 | 25.12 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 26.92 | 24.51 |
| AT4G23630.2 | Thale cress | nucleus | 28.21 | 24.0 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 27.78 | 23.99 |
| AT3G10260.3 | Thale cress | plasma membrane | 26.5 | 23.22 |
| AT4G11220.1 | Thale cress | nucleus | 26.5 | 22.88 |
| AT4G01230.2 | Thale cress | cytosol | 23.5 | 22.54 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 19.66 | 22.33 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:821480 | UniProt:A0A178VGH9 | UniProt:A0A1I9LL94 | ProteinID:ANM63352.1 | ProteinID:ANM63355.1 |
| ArrayExpress:AT3G19460 | EnsemblPlantsGene:AT3G19460 | RefSeq:AT3G19460 | TAIR:AT3G19460 | RefSeq:AT3G19460-TAIR-G | EnsemblPlants:AT3G19460.3 |
| Unigene:At.38403 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | RefSeq:NP_001325444.1 | RefSeq:NP_001325447.1 |
| ProteinID:OAP05480.1 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF65 | InterPro:Reticulon |
| TMHMM:TMhelix | UniParc:UPI0007E0D787 | SEG:seg | : | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
Coordinates
chr3:+:6747307..6749329
Molecular Weight (calculated)
26572.7 Da
IEP (calculated)
9.782
GRAVY (calculated)
0.515
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV FFHHLWQTIC CIFLFLHVMY LTVHISFVFA VKQVSLVLWA ISYVGTLINS LTLVYIGVLL SLSFPIVYEK
201: YQDHIDEKVN STSKFVRNIS RKFPLPINKE KKHQ
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV FFHHLWQTIC CIFLFLHVMY LTVHISFVFA VKQVSLVLWA ISYVGTLINS LTLVYIGVLL SLSFPIVYEK
201: YQDHIDEKVN STSKFVRNIS RKFPLPINKE KKHQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.