Factsheet for Bra001748.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82294	Canola	plastid	98.98	98.98
CDY22971	Canola	plasma membrane	97.45	97.45
CDY22970	Canola	plasma membrane	95.92	95.92
Bra022426.1-P	Field mustard	cytosol, plasma membrane, plastid	88.78	71.31
AT3G19460.3	Thale cress	plasma membrane	83.67	70.09
GSMUA_Achr7P05440_001	Banana	peroxisome, plasma membrane, vacuole	53.57	47.09
Bra040612.1-P	Field mustard	plasma membrane	43.88	46.99
Zm00001d001901_P002	Maize	plasma membrane	47.45	46.97
EES11624	Sorghum	plasma membrane	47.45	46.97
TraesCS2D01G545200.1	Wheat	plasma membrane	46.43	45.96
Zm00001d026575_P001	Maize	mitochondrion, peroxisome, plasma membrane, plastid, vacuole	46.43	45.96
Os04t0670000-01	Rice	plasma membrane	46.43	45.73
TraesCS2B01G574200.2	Wheat	plasma membrane	46.43	45.73
TraesCS2A01G544000.1	Wheat	plasma membrane	46.43	45.73
GSMUA_Achr4P20190_001	Banana	cytosol, plastid	53.57	37.23
Bra003171.1-P	Field mustard	plasma membrane	35.2	33.99
HORVU2Hr1G122310.2	Barley	cytosol, plasma membrane	32.14	33.87
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	33.16	31.71
Bra034153.1-P	Field mustard	plasma membrane	31.63	27.8
Bra027678.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	34.69	27.09
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.65	26.78
Bra027757.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	32.65	25.6
Bra004562.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.65	25.5
Bra029827.1-P	Field mustard	plasma membrane	30.61	25.1
Bra013717.1-P	Field mustard	nucleus	34.69	24.64
Bra019285.1-P	Field mustard	cytosol	33.67	24.63
Bra004291.1-P	Field mustard	plasma membrane	26.02	24.17
Bra003455.1-P	Field mustard	cytosol, peroxisome, plasma membrane	31.12	24.02
Bra037594.1-P	Field mustard	plasma membrane	27.04	23.66
Bra000739.1-P	Field mustard	cytosol	32.14	23.6
Bra010539.1-P	Field mustard	cytosol	31.12	22.68
Bra037369.1-P	Field mustard	cytosol	26.02	20.99
Bra039207.1-P	Field mustard	plasma membrane	21.94	20.67
Bra033951.1-P	Field mustard	plasma membrane	25.51	16.56
Bra035242.1-P	Field mustard	cytosol	16.84	16.5

Protein Annotations

EnsemblPlants:Bra001748.1	EnsemblPlants:Bra001748.1-P	EnsemblPlantsGene:Bra001748	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388
InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF65	PFAM:PF02453	PFscan:PS50845	SEG:seg
TMHMM:TMhelix	UniParc:UPI00025404F7	UniProt:M4CC18	MapMan:13.7.2.1	:	:

Description

AT3G19460 (E=5e-064) | reticulon family protein (RTNLB11)

Coordinates

chrA03:-:18231203..18232348

Molecular Weight (calculated)

21827.8 Da

IEP (calculated)

9.643

GRAVY (calculated)

0.482

Length

196 amino acids

Sequence
(BLAST)

001: MGDSASSSSS SSVHKSLVAD LLLWRNRTGA VILLVSSTGF WFLFERAGYN LLSFVSNVLL LLVAILFLWA KSASLLNRPL PPVPNMEIPQ EFAIKAADEI
101: RVLINHVLSI ASDITIARNP IRLLQVSFVL WAISYVGTLI NSLTLVYIVV LLSLSVPVVY ENYQEHIDDK LSSTSEVIRN ISRKIPMPVS KEKKYQ

Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)

001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.