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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • extracellular 4
  • golgi 4
  • plasma membrane 7
  • endoplasmic reticulum 5
  • vacuole 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 98.36 88.67
AT2G15280.1 Thale cress plasma membrane 79.78 72.64
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 50.82 44.93
Bra001748.1-P Field mustard plastid 46.99 43.88
KRH35738 Soybean endoplasmic reticulum 48.63 43.63
KRG91024 Soybean plasma membrane 48.63 43.63
PGSC0003DMT400066222 Potato plasma membrane 48.09 43.14
Solyc01g107620.2.1 Tomato plasma membrane 48.09 40.18
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 48.63 36.48
EES11624 Sorghum plasma membrane 38.25 35.35
Zm00001d001901_P002 Maize plasma membrane 38.25 35.35
TraesCS2A01G544000.1 Wheat plasma membrane 37.7 34.67
GSMUA_Achr7P05440_001 Banana peroxisome, plasma membrane, vacuole 41.53 34.08
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 36.07 33.33
TraesCS2B01G574200.2 Wheat plasma membrane 35.52 32.66
Os04t0670000-01 Rice plasma membrane 35.52 32.66
TraesCS2D01G545200.1 Wheat plasma membrane 34.43 31.82
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 28.96 28.49
Bra003171.1-P Field mustard plasma membrane 31.15 28.08
GSMUA_Achr4P20190_001 Banana cytosol, plastid 42.08 27.3
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 27.32 24.39
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 32.24 23.6
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 32.24 23.51
Bra004291.1-P Field mustard plasma membrane 26.23 22.75
Bra034153.1-P Field mustard plasma membrane 27.32 22.42
Bra029878.1-P Field mustard cytosol, peroxisome, plasma membrane 28.42 21.76
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 30.05 21.65
Bra019285.1-P Field mustard cytosol 31.69 21.64
Bra013717.1-P Field mustard nucleus 31.69 21.01
Bra037594.1-P Field mustard plasma membrane 25.68 20.98
Bra029827.1-P Field mustard plasma membrane 27.32 20.92
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 28.42 20.72
Bra010539.1-P Field mustard cytosol 29.51 20.07
Bra000739.1-P Field mustard cytosol 28.96 19.85
Bra039207.1-P Field mustard plasma membrane 22.4 19.71
Bra037369.1-P Field mustard cytosol 25.14 18.93
Bra033951.1-P Field mustard plasma membrane 27.32 16.56
Bra035242.1-P Field mustard cytosol 14.21 13.0
Protein Annotations
MapMan:13.7.2.1EnsemblPlantsGene:Bra040612EnsemblPlants:Bra040612.1EnsemblPlants:Bra040612.1-PGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021
InterPro:IPR003388UniProt:M4FHN4PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF125
InterPro:ReticulonTMHMM:TMhelixUniParc:UPI000253E6DF:::
Description
AT2G15280 (E=3e-082) | reticulon family protein (RTNLB10)
Coordinates
chrScaffold000223:-:10279..11101
Molecular Weight (calculated)
21331.0 Da
IEP (calculated)
10.567
GRAVY (calculated)
0.470
Length
183 amino acids
Sequence
(BLAST)
001: MWKNKRGGIL LLGSATLFWI LFEKCGYSFF PFVANIQLLV VVILFLWAKS AILFNRPMPE LPNFEITEAS LLMVADPLRL LINTLLSIAR DIYVNRNAKQ
101: LFRVSVVLWT ISLVGSFLNF FTILYLGIVL GMLIPILYER YQHHIDEKLS VTHRMIQTQY RKIDERLLQK LIAKPTSKIK KMQ
Best Arabidopsis Sequence Match ( AT2G15280.1 )
(BLAST)
001: MEESVHQSIR FGSVADLIMW KNRRGGFLLL GSTTLLWFLF EKCGYSFFPF VVNTQLLSVV ILFLWAKSAI LFNRPMPQLP NLEITEEFVF MVADAIRVWI
101: NTVLAVAREI YVGRNAKQLF RVSVVLWTVS FVGNFLNFLT ILYLGVVLSL LIPFLYERYQ DLIDEKLSLT HRVIQTQYRK IDERLLQKII AKPTNKIKKM
201: Q
Arabidopsis Description
RTNLB10Reticulon-like protein B10 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPD8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.