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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus, plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003379.1-P
Bra007455.1-P
Bra014538.1-P
Bra018566.1-P
Bra030769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Bra018566.1-P AT1G09330.1 21798944
AT4G11220.1 Bra030769.1-P AT1G09330.1 21798944
AT4G11220.1 Bra003379.1-P AT3G59500.1 21798944
AT4G11220.1 Bra007455.1-P AT3G59500.1 21798944
AT4G11220.1 Bra014538.1-P AT3G59500.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90792 Canola cytosol, peroxisome, plasma membrane 99.63 99.63
AT4G11220.1 Thale cress nucleus 92.51 91.14
Bra010539.1-P Field mustard cytosol 83.9 83.27
Bra019285.1-P Field mustard cytosol 83.52 83.21
Bra013717.1-P Field mustard nucleus 85.39 82.61
CDY05135 Canola mitochondrion 95.88 81.79
KRH41254 Soybean cytosol, nucleus, plasma membrane 66.29 69.69
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 65.54 69.44
KRH59988 Soybean mitochondrion 65.92 69.29
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 63.3 67.33
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 62.55 66.8
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 61.42 65.34
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 65.92 65.19
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 65.92 65.19
Os01t0226300-01 Rice plasma membrane 43.45 65.17
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 61.8 64.71
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 59.93 63.74
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 59.93 63.74
Zm00001d012776_P001 Maize extracellular 60.3 63.64
KXG33320 Sorghum cytosol, nucleus, plasma membrane 61.42 63.57
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 59.18 63.45
EES19841 Sorghum cytosol, nucleus, plasma membrane 60.3 63.14
Zm00001d043551_P003 Maize plasma membrane 60.67 63.03
Os05t0526400-01 Rice plasma membrane 59.18 62.95
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 58.43 62.9
Os01t0736900-01 Rice plasma membrane 59.55 62.85
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 58.05 62.5
Zm00001d038768_P001 Maize extracellular, mitochondrion 58.8 61.81
TraesCS3A01G278800.1 Wheat golgi 57.3 61.69
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 58.43 61.66
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 58.43 61.18
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 57.3 60.71
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 58.05 60.08
GSMUA_Achr3P31920_001 Banana cytosol 47.94 58.45
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 55.06 58.33
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 55.43 58.27
GSMUA_Achr4P08400_001 Banana cytosol 54.68 57.71
Zm00001d016041_P001 Maize extracellular 46.82 54.35
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 46.44 53.91
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 57.68 53.85
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 57.3 53.5
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 55.81 53.41
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 49.81 53.2
Zm00001d020229_P001 Maize plasma membrane 29.96 52.63
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 45.69 52.59
KXG31516 Sorghum cytosol, nucleus, plasma membrane 55.81 52.46
Zm00001d020729_P001 Maize plasma membrane 18.35 51.58
TraesCS1A01G346800.3 Wheat plasma membrane 48.31 51.19
EER89811 Sorghum peroxisome 47.57 49.61
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 56.55 49.35
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 47.94 49.23
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 47.94 49.23
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 47.57 48.85
Os06t0503400-01 Rice plasma membrane 48.31 48.68
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 47.57 48.66
HORVU3Hr1G030760.2 Barley mitochondrion 56.55 48.09
Bra035242.1-P Field mustard cytosol 35.96 48.0
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 46.82 47.89
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 56.93 47.2
Bra037369.1-P Field mustard cytosol 42.32 46.5
HORVU7Hr1G081290.4 Barley plastid 38.58 44.59
HORVU7Hr1G075700.2 Barley mitochondrion 47.94 42.67
GSMUA_Achr3P15760_001 Banana cytosol 23.22 41.33
Bra029827.1-P Field mustard plasma membrane 33.71 37.66
Bra037594.1-P Field mustard plasma membrane 31.09 37.05
Bra004291.1-P Field mustard plasma membrane 27.34 34.6
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 23.22 34.44
Bra003171.1-P Field mustard plasma membrane 24.72 32.51
Bra001748.1-P Field mustard plastid 23.6 32.14
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 23.22 30.24
Bra029878.1-P Field mustard cytosol, peroxisome, plasma membrane 26.59 29.71
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 26.59 29.1
Bra040612.1-P Field mustard plasma membrane 19.85 28.96
Bra034153.1-P Field mustard plasma membrane 23.97 28.7
Bra033951.1-P Field mustard plasma membrane 26.97 23.84
Bra039207.1-P Field mustard plasma membrane 17.98 23.08
Protein Annotations
EnsemblPlants:Bra000739.1EnsemblPlants:Bra000739.1-PEnsemblPlantsGene:Bra000739GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF70PFAM:PF02453PFscan:PS50845SEG:seg
TMHMM:TMhelixUniParc:UPI000253FC7EUniProt:M4C961MapMan:13.7.2.1::
Description
AT4G11220 (E=4e-126) BTI2 | BTI2 (VIRB2-INTERACTING PROTEIN 2)
Coordinates
chrA03:-:12794486..12795731
Molecular Weight (calculated)
29671.4 Da
IEP (calculated)
9.021
GRAVY (calculated)
-0.047
Length
267 amino acids
Sequence
(BLAST)
001: MADEHKHEES LPNLDPAVEV VERGSLMDKI SEKIHHKGGS SSSSDDESEK KPSSPSSLKS KVYRLFGRER PVHKVLGGGK PADIFMWKNK KMSGGVLGGA
101: TVAWVLFELM EYHLLTLLCH VMIVALAVLF LWSNATMFIH KSPPKIPEVH IPEDPLLQLA SGLRIEINRG FSSLHEIASG RDLKKFLSAL FGLWILSILG
201: GCCSFLTLAY IALVLLFTVP LVYDKYEDKV DSYGEKAMAE LKKQYAVLDA KVLSKIPRGP LKDKKKD
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.