Factsheet for Bra034153.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36282	Canola	plasma membrane	97.76	97.76
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	87.89	82.01
AT3G10915.7	Thale cress	plasma membrane	82.06	72.91
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	53.81	63.16
KRG93546	Soybean	plasma membrane	52.47	58.79
KRH18469	Soybean	plasma membrane	51.12	57.58
PGSC0003DMT400042905	Potato	cytosol, peroxisome, plasma membrane	60.54	56.72
EER92307	Sorghum	peroxisome	53.36	52.19
Zm00001d047517_P001	Maize	peroxisome	52.91	51.75
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	53.36	51.74
TraesCS4D01G171300.2	Wheat	peroxisome	51.12	50.22
Os03t0336600-02	Rice	plasma membrane	51.57	49.78
TraesCS4A01G135900.1	Wheat	peroxisome	50.67	49.78
TraesCS4B01G169100.2	Wheat	cytosol, peroxisome, vacuole	50.22	49.34
HORVU4Hr1G050020.1	Barley	plastid	52.02	44.79
Bra003171.1-P	Field mustard	plasma membrane	29.6	32.51
Bra001748.1-P	Field mustard	plastid	27.8	31.63
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	28.25	30.73
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	42.15	28.75
Bra037594.1-P	Field mustard	plasma membrane	28.7	28.57
Bra022426.1-P	Field mustard	cytosol, plasma membrane, plastid	30.49	27.87
Bra027757.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	30.94	27.6
Bra004562.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.94	27.49
Bra040612.1-P	Field mustard	plasma membrane	22.42	27.32
Bra003455.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.94	27.17
Bra029827.1-P	Field mustard	plasma membrane	28.7	26.78
Bra027678.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	30.04	26.69
Bra004291.1-P	Field mustard	plasma membrane	23.77	25.12
Bra037369.1-P	Field mustard	cytosol	26.46	24.28
Bra019285.1-P	Field mustard	cytosol	29.15	24.25
Bra000739.1-P	Field mustard	cytosol	28.7	23.97
Bra013717.1-P	Field mustard	nucleus	29.15	23.55
Bra010539.1-P	Field mustard	cytosol	28.25	23.42
Bra039207.1-P	Field mustard	plasma membrane	19.73	21.15
Bra035242.1-P	Field mustard	cytosol	18.83	21.0
Bra033951.1-P	Field mustard	plasma membrane	23.32	17.22

Protein Annotations

MapMan:13.7.2.1	EnsemblPlantsGene:Bra034153	EnsemblPlants:Bra034153.1	EnsemblPlants:Bra034153.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR003388	UniProt:M4EZB0	PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF67
InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI0002543DC9	SEG:seg	:	:

Description

AT3G10915 (E=1e-097) | reticulon family protein

Coordinates

chrA01:+:27192915..27194104

Molecular Weight (calculated)

24887.1 Da

IEP (calculated)

7.217

GRAVY (calculated)

0.326

Length

223 amino acids

Sequence
(BLAST)

001: MDSSSDNEGD YDGSNEGGST SDYRLLGRQV TVHQFMGAAD LLLWRKRNHS LGVIVLSTVA WLIFEFSGLP FLSVSSDVLL IVVILSFVLA QASGFRSRHV
101: NSLPELVLSE EMVNSAAASF RVKLNHLLVM AHDVTVGNDF RLFFKVVICL WLLSAIGCYI SFCTLVYIGT ILSVTIPALY SKYQSRVDKC CGLIHRQLSH
201: HYKLVDENVI SRLSWSFSKD KDS

Best Arabidopsis Sequence Match ( AT3G10915.2 )
(BLAST)

001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.