Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- plasma membrane 2
- plastid 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047517_P001 | Maize | peroxisome | 94.3 | 94.3 |
| Os03t0336600-02 | Rice | plasma membrane | 84.21 | 83.12 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 80.26 | 80.62 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 79.82 | 80.18 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 79.39 | 79.74 |
| HORVU4Hr1G050020.1 | Barley | plastid | 80.26 | 70.66 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 66.67 | 66.09 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 54.82 | 65.79 |
| KRG93546 | Soybean | plasma membrane | 52.19 | 59.8 |
| KRH18469 | Soybean | plasma membrane | 50.88 | 58.59 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 59.21 | 56.72 |
| Bra034153.1-P | Field mustard | plasma membrane | 52.19 | 53.36 |
| CDY36282 | Canola | plasma membrane | 51.75 | 52.91 |
| Bra029878.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 52.19 | 49.79 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 51.75 | 49.37 |
| CDY08567 | Canola | cytosol | 51.75 | 48.96 |
| AT3G10915.7 | Thale cress | plasma membrane | 52.63 | 47.81 |
| EES11624 | Sorghum | plasma membrane | 31.58 | 36.36 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 30.7 | 32.41 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 32.02 | 31.47 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 28.95 | 31.13 |
| OQU78555 | Sorghum | extracellular | 29.39 | 30.32 |
| VIT_13s0067g02960.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 42.11 | 29.36 |
| EER89811 | Sorghum | peroxisome | 32.89 | 29.3 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 28.95 | 29.2 |
| EES02516 | Sorghum | peroxisome, plastid | 27.63 | 28.9 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 32.46 | 28.68 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 30.7 | 27.45 |
| KXG21632 | Sorghum | nucleus, peroxisome, plasma membrane | 28.95 | 26.61 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 32.46 | 26.06 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 26.75 | 24.7 |
| KXG34376 | Sorghum | plasma membrane | 27.19 | 19.75 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:8082332 | UniProt:C5X0S8 | EnsemblPlants:EER92307 | ProteinID:EER92307 | ProteinID:EER92307.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF67 | InterPro:Reticulon | EnsemblPlantsGene:SORBI_3001G380400 | TMHMM:TMhelix | UniParc:UPI0001A82A2E | RefSeq:XP_002465309.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:66844315..66846595
Molecular Weight (calculated)
25110.0 Da
IEP (calculated)
9.698
GRAVY (calculated)
0.379
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAGGVEAA ANGGIEGSAD PCSSGGAGGY RFSVHQIAGG GKAADIILWR RGRVTIGVIF GATVAWWLFE KSGLSLLTIC CDIFLILIVL QFLRVKIAGL
101: LNRQPRPLPE LVLSEEMVSN AAASFRVKVN NMLMIAHDIT LGKDFRLFFQ VVLVLWLLSV IGNFCSSITL AYIGTIALVT IPALYNKYQR PVDRYAGMVH
201: RNISRHYKIV DENVISRLPR RFIRDKED
101: LNRQPRPLPE LVLSEEMVSN AAASFRVKVN NMLMIAHDIT LGKDFRLFFQ VVLVLWLLSV IGNFCSSITL AYIGTIALVT IPALYNKYQR PVDRYAGMVH
201: RNISRHYKIV DENVISRLPR RFIRDKED
001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.