CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, peroxisome, plasma membrane

Predictor Summary:

nucleus 2
peroxisome 1
plasma membrane 3
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	94.76	93.25
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	83.87	84.21
Os05t0312500-01	Rice	plasma membrane	83.47	82.47
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	82.26	81.6
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	81.45	80.48
TraesCS1D01G083100.2	Wheat	mitochondrion	81.85	70.24
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	65.73	65.73
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	60.89	60.89
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	60.08	60.08
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	47.58	59.6
EES19841	Sorghum	cytosol, nucleus, plasma membrane	54.03	52.55
KXG33320	Sorghum	cytosol, nucleus, plasma membrane	54.44	52.33
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	48.79	49.59
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	47.98	48.77
Solyc06g082740.2.1	Tomato	nucleus	43.55	47.16
KXG31516	Sorghum	cytosol, nucleus, plasma membrane	52.42	45.77
OQU84758	Sorghum	cytosol, peroxisome, plasma membrane	39.11	41.81
EES19907	Sorghum	cytosol, peroxisome, plasma membrane	35.89	39.38
KXG33168	Sorghum	golgi, peroxisome, plasma membrane	34.27	39.35
EER90788	Sorghum	cytosol, nucleus, plasma membrane	37.9	38.06
EER89811	Sorghum	peroxisome	39.11	37.89
EES03891	Sorghum	golgi, peroxisome, plasma membrane	29.84	34.91
EES02516	Sorghum	peroxisome, plastid	30.65	34.86
EES11624	Sorghum	plasma membrane	27.42	34.34
KRH30696	Soybean	plasma membrane	31.05	31.3
KXG34376	Sorghum	plasma membrane	37.1	29.3
EER92307	Sorghum	peroxisome	26.61	28.95
OQU78555	Sorghum	extracellular	24.6	27.6

Protein Annotations

MapMan:13.7.2.1	UniProt:A0A1B6P7I8	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	EnsemblPlants:KXG21632
ProteinID:KXG21632	ProteinID:KXG21632.1	ProteinID:KXG21633.1	ProteinID:KXG21634.1	PFAM:PF02453	PFscan:PS50845
PANTHER:PTHR10994	PANTHER:PTHR10994:SF94	InterPro:Reticulon	EnsemblPlantsGene:SORBI_3009G089800	TMHMM:TMhelix	UniParc:UPI0001C80531
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:16832801..16835603

Molecular Weight (calculated)

28264.7 Da

IEP (calculated)

9.757

GRAVY (calculated)

-0.014

Length

248 amino acids

Sequence
(BLAST)

001: MMSESEEHGS LLEKINEKIH EYKHSSSSSS SDSDDDKKPK KTKKKKKLFG RKHSLHHVLG GGKAADLVLW RNKQASGSIL AGVTVIWLLF EGIGYHLLTF
101: LCHALIVFLT VWFVWSNAAS FVNRSPPKFP EVILSEVQCL KVAHIARKEI NEAFYTLRNV ASGKDLKTYL MTIVVLWFIS IVGSCFSFLT LSYTIFLMAY
201: TLPMLYEKYE DQVDVVGEKA LIEIKKQYKV IDAKFISKIP MLSEKKQH

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.