Factsheet for Solyc09g055250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	97.54	97.54
Solyc06g082740.2.1	Tomato	nucleus	60.66	64.63
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	52.46	51.61
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	51.23	50.4
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	50.82	50.0
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	49.59	48.79
Solyc01g095200.2.1	Tomato	plastid	51.64	47.91
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	48.36	47.77
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	38.52	47.47
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	48.77	47.22
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	48.36	47.01
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	47.54	46.4
Os05t0312500-01	Rice	plasma membrane	47.54	46.22
Solyc03g007740.2.1	Tomato	nucleus	47.95	45.88
Solyc06g036430.2.1	Tomato	cytosol, nucleus, plasma membrane	47.54	45.85
Solyc08g081730.2.1	Tomato	endoplasmic reticulum, plastid	48.77	44.07
Solyc10g011870.2.1	Tomato	cytosol, nucleus, plasma membrane	47.13	43.73
TraesCS1D01G083100.2	Wheat	mitochondrion	47.54	40.14
Solyc12g006290.1.1	Tomato	nucleus	36.07	37.77
Solyc03g119190.2.1	Tomato	plasma membrane	32.38	36.07
Solyc05g008890.2.1	Tomato	plasma membrane	31.56	34.84
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	27.05	34.74
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	29.51	34.45
KRH30696	Soybean	plasma membrane	34.02	33.74
Solyc07g044880.2.1	Tomato	mitochondrion	18.85	32.39
Solyc01g107620.2.1	Tomato	plasma membrane	28.69	31.96
Solyc02g090370.2.1	Tomato	plasma membrane	16.39	21.39

Protein Annotations

EnsemblPlants:Solyc09g055250.2.1	EnsemblPlantsGene:Solyc09g055250.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	InterPro:Reticulon
ncoils:Coil	PANTHER:PTHR10994	PANTHER:PTHR10994:SF70	PFAM:PF02453	PFscan:PS50845	SEG:seg
TMHMM:TMhelix	UniParc:UPI000276AD4C	UniProt:K4CT24	MapMan:13.7.2.1	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4CT24]

Coordinates

chr9:-:38299138..38301442

Molecular Weight (calculated)

28257.3 Da

IEP (calculated)

8.230

GRAVY (calculated)

-0.003

Length

244 amino acids

Sequence
(BLAST)

001: MSDPVKEIVP ESSAKDQHDY SSSSSTDGDD FRQPTNDKSH LFGRQKPVHA ALGGGKPADI LLWRNKQISA GMLAAATVIW LLFEWIGYHL LTFICHSLIL
101: TLAILFFWSN ISHFVNKNPM EFPEIILPEK LWTQVALLLR DRFNWAFALF WEVASGKDLK KFLYTILALW IVSIVGSWFD FLTIVYILFV MMLTVPCFYE
201: KHEDQVDTYA QKAKKELKRQ YSHLDEKVLQ KLPKVPFVKD SKQQ

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.