Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 94.86 | 94.86 |
| Solyc03g007740.2.1 | Tomato | nucleus | 77.87 | 77.25 |
| Solyc01g095200.2.1 | Tomato | plastid | 68.77 | 66.16 |
| Os01t0226300-01 | Rice | plasma membrane | 45.06 | 64.04 |
| Zm00001d012776_P001 | Maize | extracellular | 64.03 | 64.03 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 65.22 | 63.95 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 66.4 | 63.88 |
| Os01t0736900-01 | Rice | plasma membrane | 63.24 | 63.24 |
| Zm00001d043551_P003 | Maize | plasma membrane | 64.03 | 63.03 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 63.24 | 62.75 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 62.06 | 62.55 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 62.06 | 62.55 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 61.26 | 62.5 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 63.64 | 62.4 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 61.26 | 62.25 |
| Os05t0526400-01 | Rice | plasma membrane | 61.26 | 61.75 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.47 | 61.69 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 61.66 | 61.42 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 52.96 | 61.19 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 60.87 | 61.11 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 60.87 | 61.11 |
| TraesCS3A01G278800.1 | Wheat | golgi | 59.68 | 60.89 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 61.26 | 60.78 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 60.47 | 60.47 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 60.08 | 60.08 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 63.64 | 59.63 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 57.71 | 58.4 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 58.1 | 57.87 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 56.52 | 57.2 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 60.08 | 54.48 |
| Zm00001d020229_P001 | Maize | plasma membrane | 32.41 | 53.95 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 60.47 | 53.87 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.47 | 53.5 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.08 | 53.15 |
| Zm00001d016041_P001 | Maize | extracellular | 48.22 | 53.04 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 48.22 | 53.04 |
| Zm00001d020729_P001 | Maize | plasma membrane | 19.76 | 52.63 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 47.04 | 51.29 |
| EER89811 | Sorghum | peroxisome | 51.38 | 50.78 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 61.26 | 50.65 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 51.38 | 49.81 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 49.41 | 49.6 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.59 | 49.23 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.59 | 49.23 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.59 | 49.23 |
| Os06t0503400-01 | Rice | plasma membrane | 50.99 | 48.68 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 60.08 | 48.41 |
| Solyc06g082740.2.1 | Tomato | nucleus | 43.08 | 47.6 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 45.85 | 47.54 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 60.08 | 47.2 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 47.83 | 46.36 |
| HORVU7Hr1G081290.4 | Barley | plastid | 40.71 | 44.59 |
| Solyc12g006290.1.1 | Tomato | nucleus | 39.92 | 43.35 |
| KRG91601 | Soybean | mitochondrion | 57.71 | 42.94 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 50.2 | 42.33 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 33.2 | 40.19 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 34.78 | 40.18 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 22.53 | 40.14 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 23.72 | 40.0 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 34.78 | 39.82 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 29.25 | 38.95 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 28.46 | 32.88 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 16.21 | 21.93 |
Protein Annotations
| EnsemblPlants:Solyc06g036430.2.1 | EnsemblPlantsGene:Solyc06g036430.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | InterPro:Reticulon |
| ncoils:Coil | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000276612B | UniProt:K4C509 | MapMan:13.7.2.1 | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4C509]
Coordinates
chr6:+:25980533..25983217
Molecular Weight (calculated)
28218.5 Da
IEP (calculated)
8.896
GRAVY (calculated)
0.200
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHAGENDS FVDSVTDKVN DKFHSHDYSS DSDDDKGKKS PVNAVKTKIY RLFGREKPVH KVLGGGKPAD VFLWRDKKVT AGVLGFATVI WALFELLEYH
101: LLTLVCHILI VAVAVLFLWS NASAFINTAP PHIPEVVLPK DIVLSVASAL RIEINRALEI LRDIASGKDL KKFLVVIVGL WIVSILGNIW NFLTLFYIVF
201: VLLHTVPVLY EKHEDKVDAV AEKAEAEIKK HYAVFDANVL SKIPRGPLKG KKQ
101: LLTLVCHILI VAVAVLFLWS NASAFINTAP PHIPEVVLPK DIVLSVASAL RIEINRALEI LRDIASGKDL KKFLVVIVGL WIVSILGNIW NFLTLFYIVF
201: VLLHTVPVLY EKHEDKVDAV AEKAEAEIKK HYAVFDANVL SKIPRGPLKG KKQ
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.