Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62522 | Canola | cytosol | 24.0 | 45.0 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 16.0 | 40.0 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 55.33 | 33.07 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 18.67 | 32.18 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 45.33 | 31.05 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 50.67 | 30.28 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 50.0 | 29.76 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 50.0 | 29.07 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 46.0 | 27.27 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 44.0 | 26.19 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 43.33 | 25.9 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 43.33 | 25.9 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 43.33 | 25.9 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 44.0 | 25.88 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, peroxisome | 34.0 | 25.76 |
| Solyc03g007740.2.1 | Tomato | nucleus | 43.33 | 25.49 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 42.67 | 25.4 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 42.67 | 25.2 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 42.67 | 25.1 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 42.0 | 24.8 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 42.0 | 24.71 |
| KRH59988 | Soybean | mitochondrion | 41.33 | 24.41 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 41.33 | 24.41 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 41.33 | 24.41 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 42.67 | 24.33 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 41.33 | 24.31 |
| KRH40357 | Soybean | endoplasmic reticulum | 41.33 | 24.12 |
| KRH00872 | Soybean | endoplasmic reticulum | 41.33 | 23.94 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 40.0 | 23.72 |
| Solyc01g095200.2.1 | Tomato | plastid | 41.33 | 23.57 |
| KRH06560 | Soybean | endoplasmic reticulum | 40.0 | 23.44 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 41.33 | 23.4 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 40.0 | 23.35 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 39.33 | 23.32 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 39.33 | 23.32 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 39.33 | 23.23 |
| Bra000739.1-P | Field mustard | cytosol | 41.33 | 23.22 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 38.67 | 23.2 |
| Bra019285.1-P | Field mustard | cytosol | 41.33 | 23.13 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 38.67 | 23.11 |
| CDY10954 | Canola | cytosol | 41.33 | 22.96 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 40.67 | 22.85 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 38.0 | 22.8 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.0 | 22.71 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.0 | 22.71 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 40.67 | 22.59 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 40.67 | 22.59 |
| AT4G23630.2 | Thale cress | nucleus | 41.33 | 22.55 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 37.33 | 22.4 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 40.67 | 22.18 |
| GSMUA_Achr6P15870_001 | Banana | golgi, peroxisome, plasma membrane | 36.67 | 22.18 |
| Bra013717.1-P | Field mustard | nucleus | 40.67 | 22.1 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 40.67 | 22.1 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 36.67 | 22.0 |
| CDY24806 | Canola | cytosol | 40.0 | 21.9 |
| AT4G11220.1 | Thale cress | nucleus | 39.33 | 21.77 |
| CDY41666 | Canola | cytosol | 40.0 | 21.74 |
| Bra010539.1-P | Field mustard | cytosol | 38.67 | 21.56 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 22.67 | 21.12 |
| GSMUA_Achr5P07570_001 | Banana | golgi, peroxisome, plasma membrane | 34.67 | 20.97 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 37.33 | 20.66 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 33.33 | 20.16 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 33.33 | 20.0 |
| CDY05135 | Canola | mitochondrion | 41.33 | 19.81 |
| GSMUA_Achr10P... | Banana | golgi, peroxisome, plasma membrane | 32.0 | 19.35 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 26.67 | 19.05 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 30.67 | 19.01 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 38.67 | 18.47 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 26.0 | 17.49 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 19.33 | 16.11 |
| GSMUA_Achr10P... | Banana | plasma membrane | 24.0 | 15.65 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 25.33 | 15.51 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 23.33 | 15.22 |
| Bra037369.1-P | Field mustard | cytosol | 24.0 | 14.81 |
| CDY48510 | Canola | cytosol | 24.0 | 14.81 |
| AT4G01230.2 | Thale cress | cytosol | 24.0 | 14.75 |
| KRG91601 | Soybean | mitochondrion | 33.33 | 14.71 |
| Bra035242.1-P | Field mustard | cytosol | 19.33 | 14.5 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 23.33 | 14.4 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 21.33 | 14.35 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 22.67 | 13.77 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 24.0 | 13.64 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 22.0 | 11.7 |
| GSMUA_AchrUn_... | Banana | golgi | 27.33 | 11.65 |
| CDX89122 | Canola | extracellular, mitochondrion | 6.0 | 5.88 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P15760_001 | EnsemblPlants:GSMUA_Achr3T15760_001 | EnsemblPlantsGene:GSMUA_Achr3G15760_001 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF99 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg | UniParc:UPI0002960DEE | UniProt:M0SEZ2 |
| MapMan:13.7.2.1 | : | : | : | : | : |
Description
Putative Reticulon-like protein B1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G15760_001]
Coordinates
chr3:+:16781023..16782138
Molecular Weight (calculated)
17000.0 Da
IEP (calculated)
8.915
GRAVY (calculated)
0.340
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKASEVAEA VESKIFRLFG REKAVHRILG GGKLELIVAE IHGVVIRSLT SFLEARLRIC IRFLERKKEE SWDVWPLLLN KKTSAAVLSG ATPVWVWFEL
101: MEYHLLSLVC HCLVSSLAIL FLWSDTSTFI NKSRPHVPED LAVNIALSLR
101: MEYHLLSLVC HCLVSSLAIL FLWSDTSTFI NKSRPHVPED LAVNIALSLR
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.