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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
 endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH40357 Soybean endoplasmic reticulum 77.34 77.04
KRH48008 Soybean cytosol, peroxisome, plasma membrane 92.97 75.8
KRH00872 Soybean endoplasmic reticulum 75.78 74.9
KRG99174 Soybean endoplasmic reticulum, plasma membrane 25.39 74.71
KRH41254 Soybean cytosol, nucleus, plasma membrane 69.53 70.08
KRH59988 Soybean mitochondrion 69.14 69.69
Solyc01g095200.2.1 Tomato plastid 71.09 69.2
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 67.19 67.45
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 69.53 67.17
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 67.97 66.16
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 64.06 65.34
CDX79993 Canola cytosol, peroxisome, plasma membrane 64.06 65.34
CDY42012 Canola cytosol, peroxisome, plasma membrane 64.06 65.34
CDY52012 Canola cytosol, peroxisome, plasma membrane 64.06 64.57
Os01t0736900-01 Rice plasma membrane 63.67 64.43
Zm00001d043551_P003 Maize plasma membrane 64.06 63.81
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 62.5 63.74
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 62.5 63.74
Os05t0526400-01 Rice plasma membrane 62.11 63.35
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 61.33 63.31
Zm00001d012776_P001 Maize extracellular 62.5 63.24
KXG33320 Sorghum cytosol, nucleus, plasma membrane 63.67 63.18
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 61.33 63.05
CDY53913 Canola cytosol, peroxisome, plasma membrane 62.5 62.99
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 62.5 62.99
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 61.72 62.7
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 62.11 62.35
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 61.33 62.06
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 62.5 62.02
TraesCS3A01G278800.1 Wheat golgi 59.77 61.69
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 60.94 61.66
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 59.38 61.29
Os01t0226300-01 Rice plasma membrane 42.58 61.24
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 60.94 61.18
EES19841 Sorghum cytosol, nucleus, plasma membrane 60.94 61.18
Zm00001d038768_P001 Maize extracellular, mitochondrion 59.38 59.84
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 58.2 59.13
GSMUA_Achr3P31920_001 Banana cytosol 49.61 57.99
GSMUA_Achr4P08400_001 Banana cytosol 57.03 57.71
KRH35223 Soybean cytosol, nucleus, plasma membrane 55.86 57.2
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 54.3 55.6
KXG31516 Sorghum cytosol, nucleus, plasma membrane 61.33 55.28
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 60.16 55.2
VIT_02s0025g00590.t01 Wine grape mitochondrion 12.89 55.0
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 61.33 54.9
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 60.94 54.55
Zm00001d020229_P001 Maize plasma membrane 30.86 51.97
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 61.72 51.63
TraesCS1A01G346800.3 Wheat plasma membrane 50.39 51.19
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 45.7 50.87
Zm00001d020729_P001 Maize plasma membrane 18.36 49.47
HORVU3Hr1G030760.2 Barley mitochondrion 60.55 49.36
AT4G01230.2 Thale cress cytosol 46.48 48.77
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 61.33 48.76
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 49.61 48.66
EER89811 Sorghum peroxisome 48.44 48.44
Zm00001d016041_P001 Maize extracellular 43.36 48.26
Bra037369.1-P Field mustard cytosol 45.7 48.15
CDY48510 Canola cytosol 45.7 48.15
CDY07184 Canola cytosol, peroxisome, plasma membrane 44.92 47.33
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 47.27 46.36
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.88 46.15
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.88 46.15
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 41.8 46.12
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.09 45.38
Os06t0503400-01 Rice plasma membrane 46.48 44.91
KRH45979 Soybean cytosol, nucleus, plasma membrane 42.19 44.44
KRH14529 Soybean cytosol, peroxisome, plasma membrane 42.19 44.08
KRH73588 Soybean plasma membrane 40.62 42.45
KRH39144 Soybean plasma membrane 36.33 41.89
KRH48561 Soybean plasma membrane 36.33 41.89
KRG91601 Soybean mitochondrion 54.69 41.18
HORVU7Hr1G081290.4 Barley plastid 37.11 41.13
GSMUA_Achr3P15760_001 Banana cytosol 23.44 40.0
KRG99024 Soybean plasma membrane 41.02 39.77
HORVU7Hr1G075700.2 Barley mitochondrion 46.48 39.67
KRG91024 Soybean plasma membrane 30.86 38.73
KRH35899 Soybean plasma membrane 31.64 38.21
KRH35738 Soybean endoplasmic reticulum 29.69 37.25
KRH66004 Soybean endoplasmic reticulum, golgi, plasma membrane 29.3 35.89
KRH30696 Soybean plasma membrane 33.98 35.37
CDX89122 Canola extracellular, mitochondrion 20.7 34.64
KRH75801 Soybean plasma membrane 27.73 33.97
KRH28521 Soybean endoplasmic reticulum 26.56 32.08
KRH18469 Soybean plasma membrane 23.44 30.3
KRH76938 Soybean endoplasmic reticulum, plasma membrane 18.75 29.81
KRG93546 Soybean plasma membrane 23.05 29.65
Protein Annotations
EntrezGene:100796111MapMan:13.7.2.1EMBL:ACUP02009850EMBL:BT097405UniProt:C6TIC4EnsemblPlantsGene:GLYMA_16G030700
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021InterPro:IPR003388EnsemblPlants:KRH06560ProteinID:KRH06560ProteinID:KRH06560.1
PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF70InterPro:ReticulonTMHMM:TMhelix
UniParc:UPI00018C7006SEG:seg::::
Description
hypothetical protein
Coordinates
chr16:-:2917258..2919878
Molecular Weight (calculated)
28477.8 Da
IEP (calculated)
8.139
GRAVY (calculated)
0.196
Length
256 amino acids
Sequence
(BLAST)
001: MADESEHTAA PASGESLLDK IAEKIHGHHD SSSSSDSDSE KKETSSIKEK VFRLFGREKP VHSVLGGGKP ADVLLWRNKK ISASVLGVAT AVWIFFELLE
101: YHLLTLVCHI SILVLAVLFL WSNAHTFIHK APPCIPTVHL PEEPIRQFAS ALTIEINRGF AALHAIGSGR DLKTFLIIIV GTWIISIVGS WCNFLTLFYI
201: VFVLLHTVPV IYDKYEDKID PLAEKALIEF KKQYAVFDEK VLNKIPKGPL KGKKLA
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.