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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • plasma membrane 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, peroxisome, plastid, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48510 Canola cytosol 84.43 84.77
Bra037369.1-P Field mustard cytosol 84.43 84.77
CDY07184 Canola cytosol, peroxisome, plasma membrane 84.02 84.36
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 56.15 53.73
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 53.28 51.38
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 52.05 49.22
KRH40357 Soybean endoplasmic reticulum 51.23 48.64
Os05t0526400-01 Rice plasma membrane 49.18 47.81
Os01t0226300-01 Rice plasma membrane 34.84 47.75
KRH00872 Soybean endoplasmic reticulum 50.41 47.49
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 47.95 47.18
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 48.36 47.01
TraesCS3A01G278800.1 Wheat golgi 47.54 46.77
KRH06560 Soybean endoplasmic reticulum 48.77 46.48
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 47.95 46.43
Zm00001d043551_P003 Maize plasma membrane 48.77 46.3
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 47.54 46.22
KXG33320 Sorghum cytosol, nucleus, plasma membrane 48.77 46.12
GSMUA_Achr3P31920_001 Banana cytosol 41.39 46.12
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 49.59 46.01
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 47.95 45.88
Os01t0736900-01 Rice plasma membrane 47.54 45.85
Zm00001d012776_P001 Maize extracellular 47.54 45.85
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 46.31 45.56
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 47.13 45.45
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 46.31 45.38
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 46.31 44.84
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 46.72 44.71
GSMUA_Achr4P08400_001 Banana cytosol 45.9 44.27
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 47.95 44.15
EES19841 Sorghum cytosol, nucleus, plasma membrane 45.9 43.92
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 44.67 43.6
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 45.9 43.58
AT4G23630.2 Thale cress nucleus 48.77 43.27
Solyc01g095200.2.1 Tomato plastid 46.31 42.97
Zm00001d038768_P001 Maize extracellular, mitochondrion 44.67 42.91
AT4G11220.1 Thale cress nucleus 47.54 42.8
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 47.54 41.58
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 45.9 41.33
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 47.95 40.91
KXG31516 Sorghum cytosol, nucleus, plasma membrane 47.54 40.85
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 47.54 40.56
KRH48008 Soybean cytosol, peroxisome, plasma membrane 50.82 39.49
TraesCS1A01G346800.3 Wheat plasma membrane 39.34 38.1
KRG99174 Soybean endoplasmic reticulum, plasma membrane 13.52 37.93
Zm00001d020729_P001 Maize plasma membrane 14.75 37.89
Zm00001d016041_P001 Maize extracellular 35.66 37.83
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 47.13 37.58
Zm00001d020229_P001 Maize plasma membrane 23.36 37.5
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 39.75 37.16
HORVU3Hr1G030760.2 Barley mitochondrion 47.13 36.62
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 34.43 36.52
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 47.54 36.02
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 34.02 35.78
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 38.11 35.77
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 37.3 35.0
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 37.3 35.0
EER89811 Sorghum peroxisome 35.66 33.98
AT3G18260.1 Thale cress plasma membrane 31.15 33.78
Os06t0503400-01 Rice plasma membrane 36.48 33.58
VIT_02s0025g00590.t01 Wine grape mitochondrion 8.2 33.33
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 34.43 32.18
AT1G68230.2 Thale cress plasma membrane 28.28 32.09
HORVU7Hr1G081290.4 Barley plastid 30.33 32.03
AT3G10260.3 Thale cress plasma membrane 34.43 31.46
HORVU7Hr1G075700.2 Barley mitochondrion 36.89 30.0
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 23.36 28.08
AT2G15280.1 Thale cress plasma membrane 21.31 25.87
GSMUA_Achr3P15760_001 Banana cytosol 14.75 24.0
AT3G19460.3 Thale cress plasma membrane 22.54 23.5
AT2G23640.1 Thale cress cytosol, peroxisome, plasma membrane 19.26 22.82
AT3G10915.7 Thale cress plasma membrane 23.36 22.71
Protein Annotations
MapMan:13.7.2.1EntrezGene:827950ProteinID:AAB61018.1ProteinID:AEE81997.1ProteinID:ANM66960.1ArrayExpress:AT4G01230
EnsemblPlantsGene:AT4G01230RefSeq:AT4G01230TAIR:AT4G01230RefSeq:AT4G01230-TAIR-GEnsemblPlants:AT4G01230.2ProteinID:CAB80932.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021InterPro:IPR003388RefSeq:NP_001328823.1RefSeq:NP_192032.1PFAM:PF02453
PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF95UniProt:Q9M145InterPro:ReticulonTMHMM:TMhelix
UniParc:UPI00019B2429SEG:seg::::
Description
RTNLB7Reticulon-like protein B7 [Source:UniProtKB/Swiss-Prot;Acc:Q9M145]
Coordinates
chr4:-:516021..517516
Molecular Weight (calculated)
27565.1 Da
IEP (calculated)
4.983
GRAVY (calculated)
0.269
Length
244 amino acids
Sequence
(BLAST)
001: MEEEKLEIVG PLEEPLMGNI VPEEINGLDS LTSSDSDSEK PDSPVPINAP IYRMFGRERP IHMVLGGGKP ADVLLWRDKK VTLGLLSAVT VIWLLFGFGG
101: RRLLTSLCRG SILFLLLSFL WSNALNKSPE NMMDIYIPEK PLLQAASAMT FELNCAFATL RSIALERDIK NFVMAVIGLW LVSVIGNWFS FLSLLYICFV
201: LIHTVPMLYE KYEDEIDPIA EKAVIEMKKH YQVFEAKFLS KIPH
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.